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Angela M Yu
Angela M Yu
Verified email at bcm.edu
Title
Cited by
Cited by
Year
High-throughput determination of RNA structures
EJ Strobel, AM Yu, JB Lucks
Nature Reviews Genetics 19 (10), 615-634, 2018
1962018
Cotranscriptional folding of a riboswitch at nucleotide resolution
KE Watters, EJ Strobel, AM Yu, JT Lis, JB Lucks
Nature structural & molecular biology 23 (12), 1124-1131, 2016
1942016
The SLE transcriptome exhibits evidence of chronic endotoxin exposure and has widespread dysregulation of non-coding and coding RNAs
L Shi, Z Zhang, AM Yu, W Wang, Z Wei, E Akhter, K Maurer, PC Reis, ...
PloS one 9 (5), e93846, 2014
1552014
Characterizing RNA structures in vitro and in vivo with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
KE Watters, MY Angela, EJ Strobel, AH Settle, JB Lucks
Methods 103, 34-48, 2016
962016
Computationally reconstructing cotranscriptional RNA folding from experimental data reveals rearrangement of non-native folding intermediates
MY Angela, PM Gasper, L Cheng, LB Lai, S Kaur, V Gopalan, AA Chen, ...
Molecular cell 81 (4), 870-883. e10, 2021
81*2021
Nanopore sequencing in microgravity
ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin, ...
npj Microgravity 2 (1), 1-9, 2016
802016
Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch
L Cheng, EN White, NL Brandt, AM Yu, AA Chen, JB Lucks
Nucleic acids research 50 (21), 12001-12018, 2022
292022
SnapShot: RNA structure probing technologies
PD Carlson, ME Evans, MY Angela, EJ Strobel, JB Lucks
Cell 175 (2), 600-600. e1, 2018
182018
Estimating RNA structure chemical probing reactivities from reverse transcriptase stops and mutations
AM Yu, ME Evans, JB Lucks
BioRxiv, 292532, 2018
82018
The anticancer compound JTE-607 reveals hidden sequence specificity of the mRNA 3′ processing machinery
L Liu, AM Yu, X Wang, LV Soles, X Teng, Y Chen, Y Yoon, KSK Sarkan, ...
Nature Structural & Molecular Biology 30 (12), 1947-1957, 2023
72023
Tracking RNA structures as RNAs transit through the cell
AM Yu, JB Lucks
Nature Structural & Molecular Biology 26 (4), 256-257, 2019
62019
The effect of pseudoknot base pairing on cotranscriptional structural switching of the fluoride riboswitch
LM Hertz, EN White, K Kuznedelov, L Cheng, AM Yu, R Kakkaramadam, ...
Nucleic acids research 52 (8), 4466-4482, 2024
42024
DUETT quantitatively identifies known and novel events in nascent RNA structural dynamics from chemical probing data
AY Xue, AM Yu, JB Lucks, N Bagheri
Bioinformatics 35 (24), 5103-5112, 2019
42019
Nanopore sequencing in microgravity. NPJ Microgravity. 2016; 2: 16035
ABR McIntyre, L Rizzardi, AM Yu, N Alexander, GL Rosen, DJ Botkin
42016
Efficient digest of high-throughput sequencing data in a reproducible report
Z Zhang, J Leipzig, A Sasson, AM Yu, JC Perin, HM Xie, M Sarmady, ...
BMC bioinformatics 14, 1-10, 2013
22013
Predicting Drug Interactions and Mutagenicity with Ensemble Classifiers on Subgraphs of Molecules
A Schaumberg, A Yu, T Koshi, X Zong, S Rayadhurgam
arXiv preprint arXiv:1601.07233, 2016
12016
Deciphering the Human Splicing Code with Massively Parallel Reporter Assays
M Shelby, S Koplik, A Yu, C Roco, Y Zhang, N Bogard, A Sabo, J Linder, ...
2024 International Mammalian Synthetic Biology Workshop (mSBW), 2024
2024
A nuclear RNA degradation code for eukaryotic transcriptome surveillance
LV Soles, L Liu, X Zou, Y Yoon, S Li, L Tian, M Valdez, A Yu, H Yin, W Li, ...
bioRxiv, 2024.07. 23.604837, 2024
2024
NAR Breakthrough Article Cotranscriptional RNA strand exchange underlies the
L Cheng, EN White, NL Brandt, AM Yu, AA Chen, JB Lucks
Nucleic Acids Research 50 (21), 12001-12018, 2022
2022
Computationally Reconstructing RNA Folding Pathways from Experimental Data
MY Angela
Weill Medical College of Cornell University, 2020
2020
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Articles 1–20