| The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models M Hucka, A Finney, HM Sauro, H Bolouri, JC Doyle, H Kitano, AP Arkin, ... Bioinformatics 19 (4), 524-531, 2003 | 3669 | 2003 |
| The systems biology graphical notation NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009 | 991 | 2009 |
| BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems N Le Novere, B Bornstein, A Broicher, M Courtot, M Donizelli, H Dharuri, ... Nucleic acids research 34 (suppl_1), D689-D691, 2006 | 952 | 2006 |
| Minimum information requested in the annotation of biochemical models (MIRIAM) NL Novère, A Finney, M Hucka, US Bhalla, F Campagne, J Collado-Vides, ... Nature biotechnology 23 (12), 1509-1515, 2005 | 658 | 2005 |
| Metabolic control and its analysis: additional relationships between elasticities and control coefficients DA Fell, HM Sauro European Journal of Biochemistry 148 (3), 555-561, 1985 | 362 | 1985 |
| Next generation simulation tools: the Systems Biology Workbench and BioSPICE integration HM Sauro, M Hucka, A Finney, C Wellock, H Bolouri, J Doyle, H Kitano Omics A Journal of Integrative Biology 7 (4), 355-372, 2003 | 341 | 2003 |
| Transcriptional dynamics of the embryonic stem cell switch V Chickarmane, C Troein, UA Nuber, HM Sauro, C Peterson PLoS computational biology 2 (9), e123, 2006 | 310 | 2006 |
| The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014 | 293 | 2014 |
| Quantitative analysis of signaling networks HM Sauro, BN Kholodenko Progress in biophysics and molecular biology 86 (1), 5-43, 2004 | 281 | 2004 |
| TinkerCell: modular CAD tool for synthetic biology D Chandran, FT Bergmann, HM Sauro Journal of biological engineering 3 (1), 1-17, 2009 | 232 | 2009 |
| SCAMP: a general-purpose simulator and metabolic control analysis program HM Sauro Bioinformatics 9 (4), 441-450, 1993 | 203 | 1993 |
| Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories BP Ingalls, HM Sauro Journal of theoretical biology 222 (1), 23-36, 2003 | 185 | 2003 |
| Designing and engineering evolutionary robust genetic circuits SC Sleight, BA Bartley, JA Lieviant, HM Sauro Journal of biological engineering 4 (1), 1-20, 2010 | 181 | 2010 |
| In-Fusion BioBrick assembly and re-engineering SC Sleight, BA Bartley, JA Lieviant, HM Sauro Nucleic acids research 38 (8), 2624-2636, 2010 | 180 | 2010 |
| Minimum information about a simulation experiment (MIASE) D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ... PLoS computational biology 7 (4), e1001122, 2011 | 147 | 2011 |
| 33 JARNAC: a system for interactive metabolic analysis HM Sauro | 147 | 2000 |
| Metabolic control and its analysis: extensions to the theory and matrix method HM SAURO, JR SMALL, DA FELL European journal of biochemistry 165 (1), 215-221, 1987 | 147 | 1987 |
| SBML Level 3: an extensible format for the exchange and reuse of biological models SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ... Molecular systems biology 16 (8), e9110, 2020 | 138 | 2020 |
| COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ... BMC bioinformatics 15 (1), 1-9, 2014 | 130 | 2014 |
| libRoadRunner: a high performance SBML simulation and analysis library ET Somogyi, JM Bouteiller, G JA, M König, JK Medley, MH Swat, ... Bioinformatics 31 (20), 3315-21, 2015 | 126 | 2015 |
Michael HuckaCalifornia Institute of TechnologyVerified email at caltech.edu
