| Mixed levels of coarse-graining of large proteins using elastic network model succeeds in extracting the slowest motions O Kurkcuoglu, RL Jernigan, P Doruker Polymer 45 (2), 649-657, 2004 | 80 | 2004 |
| The ribosome structure controls and directs mRNA entry, translocation and exit dynamics O Kurkcuoglu, P Doruker, TZ Sen, A Kloczkowski, RL Jernigan Physical biology 5 (4), 046005, 2008 | 77 | 2008 |
| Loop motions of triosephosphate isomerase observed with elastic networks O Kurkcuoglu, RL Jernigan, P Doruker Biochemistry 45 (4), 1173-1182, 2006 | 67 | 2006 |
| Focused functional dynamics of supramolecules by use of a mixed-resolution elastic network model O Kurkcuoglu, OT Turgut, S Cansu, RL Jernigan, P Doruker Biophysical journal 97 (4), 1178-1187, 2009 | 56 | 2009 |
| Low‐methoxyl pectin–zeolite hydrogels controlling drug release promote in vitro wound healing B Kocaaga, O Kurkcuoglu, M Tatlier, S Batirel, FS Guner Journal of Applied Polymer Science 136 (24), 47640, 2019 | 55 | 2019 |
| Collective dynamics of the ribosomal tunnel revealed by elastic network modeling O Kurkcuoglu, Z Kurkcuoglu, P Doruker, RL Jernigan Proteins: Structure, Function, and Bioinformatics 75 (4), 837-845, 2009 | 48 | 2009 |
| Collective dynamics of large proteins from mixed coarse‐grained elastic network model O Kurkcuoglu, RL Jernigan, P Doruker Qsar & Combinatorial Science 24 (4), 443-448, 2005 | 48 | 2005 |
| Repurposing of FDA‐approved drugs against active site and potential allosteric drug‐binding sites of COVID‐19 main protease M Yuce, E Cicek, T Inan, AB Dag, O Kurkcuoglu, FA Sungur Proteins: Structure, Function, and Bioinformatics 89 (11), 1425-1441, 2021 | 39 | 2021 |
| Noncovalent pyrene-polyethylene glycol coatings of carbon nanotubes achieve in vitro biocompatibility M Meran, PD Akkus, O Kurkcuoglu, E Baysak, G Hizal, E Haciosmanoglu, ... Langmuir 34 (40), 12071-12082, 2018 | 34 | 2018 |
| Identification of potential allosteric communication pathways between functional sites of the bacterial ribosome by graph and elastic network models P Guzel, O Kurkcuoglu Biochimica et Biophysica Acta (BBA)-General Subjects 1861 (12), 3131-3141, 2017 | 25 | 2017 |
| A computational and experimental approach to develop minocycline-imprinted hydrogels and determination of their drug delivery performances B Eroglu, D Dalgakiran, T Inan, O Kurkcuoglu, FS Güner Journal of Polymer Research 25, 1-10, 2018 | 18 | 2018 |
| The elastic network model reveals a consistent picture on intrinsic functional dynamics of type II restriction endonucleases A Uyar, O Kurkcuoglu, L Nilsson, P Doruker Physical Biology 8 (5), 056001, 2011 | 16 | 2011 |
| Elastic network models of coarse-grained proteins are effective for studying the structural control exerted over their dynamics RL Jernigan, L Yang, G Song, O Kurkcuoglu, P Doruker Coarse-Graining of Condensed Phase and Biomolecular Systems; Voth, GA, Ed …, 2008 | 16 | 2008 |
| Molecular dynamics simulations can predict the optimum drug loading amount in pectin hydrogels for controlled release B Kocaaga, FS Guner, O Kurkcuoglu Materials Today Communications 31, 103268, 2022 | 15 | 2022 |
| 2-Thiobarbituric acid addition improves structural integrity and controlled drug delivery of biocompatible pectin hydrogels OZ Güner, B Kocaaga, S Batirel, O Kurkcuoglu, FS Güner International Journal of Polymeric Materials and Polymeric Biomaterials 70 …, 2021 | 15 | 2021 |
| Collective Dynamics of EcoRI-DNA Complex by Elastic Network Model and Molecular Dynamics Simulations P Doruker, L Nilsson, O Kurkcuoglu Journal of Biomolecular Structure and Dynamics 24 (1), 1-15, 2006 | 15 | 2006 |
| Mechanism of cohesin loading onto chromosomes: a conformational dynamics study O Kurkcuoglu, PA Bates Biophysical journal 99 (4), 1212-1220, 2010 | 14 | 2010 |
| Pectin–zeolite-based wound dressings with controlled albumin release B Kocaaga, O Kurkcuoglu, M Tatlier, G Dinler-Doganay, S Batirel, ... Polymers 14 (3), 460, 2022 | 13 | 2022 |
| Exploring Allosteric Signaling in the Exit Tunnel of the Bacterial Ribosome by Molecular Dynamics Simulations and Residue Network Model P Guzel, HZ Yildirim, M Yuce, O Kurkcuoglu Frontiers in Molecular Biosciences, 586075, 2020 | 11 | 2020 |
| Exploring allosteric communication in multiple states of the bacterial ribosome using residue network analysis AÖK LEVİTAS Turkish Journal of Biology 42 (5), 392-404, 2018 | 11 | 2018 |
