Tak-Wah Lam
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MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
D Li, CM Liu, R Luo, K Sadakane, TW Lam
Bioinformatics 31 (10), 1674-1676, 2015
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ...
Gigascience 1 (1), 2047-217X-1-18, 2012
SOAP2: an improved ultrafast tool for short read alignment
R Li, C Yu, Y Li, TW Lam, SM Yiu, K Kristiansen, J Wang
Bioinformatics 25 (15), 1966-1967, 2009
The sequence and de novo assembly of the giant panda genome
R Li, W Fan, G Tian, H Zhu, L He, J Cai, Q Huang, Q Cai, B Li, Y Bai, ...
Nature 463 (7279), 311-317, 2010
MEGAHIT v1. 0: a fast and scalable metagenome assembler driven by advanced methodologies and community practices
D Li, R Luo, CM Liu, CM Leung, HF Ting, K Sadakane, H Yamashita, ...
Methods 102, 3-11, 2016
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Y Xie, G Wu, J Tang, R Luo, J Patterson, S Liu, W Huang, G He, S Gu, S Li, ...
Bioinformatics 30 (12), 1660-1666, 2014
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
Gigascience 2 (1), 2047-217X-2-10, 2013
Erratum: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
R Luo, B Liu, Y Xie, Z Li, W Huang, J Yuan, G He, Y Chen, Q Pan, Y Liu, ...
Gigascience 4, 1-1, 2015
SOAP3: ultra-fast GPU-based parallel alignment tool for short reads
CM Liu, T Wong, E Wu, R Luo, SM Yiu, Y Li, B Wang, C Yu, X Chu, K Zhao, ...
Bioinformatics 28 (6), 878-879, 2012
COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly
B Liu, J Yuan, SM Yiu, Z Li, Y Xie, Y Chen, Y Shi, H Zhang, Y Li, TW Lam, ...
Bioinformatics 28 (22), 2870-2874, 2012
Compressed indexing and local alignment of DNA
TW Lam, WK Sung, SL Tam, CK Wong, SM Yiu
Bioinformatics 24 (6), 791-797, 2008
A multi-task convolutional deep neural network for variant calling in single molecule sequencing
R Luo, FJ Sedlazeck, TW Lam, MC Schatz
Nature communications 10 (1), 998, 2019
SOAP3-dp: fast, accurate and sensitive GPU-based short read aligner
R Luo, T Wong, J Zhu, CM Liu, X Zhu, E Wu, LK Lee, H Lin, W Zhu, ...
PloS one 8 (5), e65632, 2013
SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data
S Huang, J Zhang, R Li, W Zhang, Z He, TW Lam, Z Peng, SM Yiu
Frontiers in genetics 2, 46, 2011
High throughput short read alignment via bi-directional BWT
TW Lam, R Li, A Tam, S Wong, E Wu, SM Yiu
2009 IEEE International Conference on Bioinformatics and Biomedicine, 31-36, 2009
Energy efficient online deadline scheduling
HL Chan, WT Chan, TW Lam, LK Lee, KS Mak, PWH Wong
SODA 7, 795-804, 2007
Symphonizing pileup and full-alignment for deep learning-based long-read variant calling
Z Zheng, S Li, J Su, AWS Leung, TW Lam, R Luo
Nature Computational Science 2 (12), 797-803, 2022
Scheduling for speed bounded processors
N Bansal, HL Chan, TW Lam, LK Lee
Automata, Languages and Programming: 35th International Colloquium, ICALP …, 2008
Renet: A deep learning approach for extracting gene-disease associations from literature
Y Wu, R Luo, HCM Leung, HF Ting, TW Lam
Research in Computational Molecular Biology: 23rd Annual International …, 2019
Compressed indexes for dynamic text collections
HL Chan, WK Hon, TW Lam, K Sadakane
ACM Transactions on Algorithms (TALG) 3 (2), 21-es, 2007
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