Kiri Choi
Kiri Choi
Korea Institute for Advanced Study
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Cited by
Cited by
Tellurium: An extensible python-based modeling environment for systems and synthetic biology
K Choi, JK Medley, M König, K Stocking, L Smith, S Gu, HM Sauro
Biosystems 171, 74-79, 2018
Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology
JK Medley, K Choi, M König, L Smith, S Gu, J Hellerstein, SC Sealfon, ...
PLOS Computational Biology 14 (6), e1006220, 2018
Synthetic biology open language (SBOL) version 2.2. 0
RS Cox III, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ...
Journal of integrative bioinformatics 15 (1), 20180001, 2018
Synthetic biology open language (SBOL) version 2.3
C Madsen, A Gońi Moreno, Z Palchick, N Roehner, C Atallah, B Bartley, ...
Journal of integrative bioinformatics 16 (2), 20190025, 2019
Tellurium: a python based modeling and reproducibility platform for systems biology
K Choi, JK Medley, C Cannistra, M Konig, L Smith, K Stocking, HM Sauro
bioRxiv, 054601, 2016
Synthetic Biology Open Language (SBOL) Version 2.1. 0
J Beal, RS Cox, R Grünberg, J McLaughlin, T Nguyen, B Bartley, M Bissell, ...
Journal of Integrative Bioinformatics 13 (3), 30-132, 2016
Recent advances in biomedical simulations: a manifesto for model engineering
JL Hellerstein, S Gu, K Choi, H Sauro
F1000Research 8, 2019
pySBOL: a python package for genetic design automation and standardization
BA Bartley, K Choi, M Samineni, Z Zundel, T Nguyen, CJ Myers, ...
ACS synthetic biology 8 (7), 1515-1518, 2018
phraSED-ML: A paraphrased, human-readable adaptation of SED-ML
K Choi, LP Smith, JK Medley, HM Sauro
Journal of bioinformatics and computational biology 14 (06), 1650035, 2016
Controlling E. coli gene expression noise
KH Kim, K Choi, B Bartley, HM Sauro
IEEE transactions on biomedical circuits and systems 9 (4), 497-504, 2015
BioSimulators: a central registry of simulation engines and services for recommending specific tools
B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ...
Nucleic acids research 50 (W1), W108-W114, 2022
Characterization of multiscale logic operations in the neural circuits
JH Woo, K Choi, SH Kim, K Han, MY Choi
Frontiers in Bioscience-Landmark 26 (10), 723-739, 2021
A portable structural analysis library for reaction networks
Y Bedaso, FT Bergmann, K Choi, K Medley, HM Sauro
Biosystems 169, 20-25, 2018
Inferring reaction networks using perturbation data
K Choi, J Hellerstein, HS Wiley, HM Sauro
bioRxiv, 351767, 2018
Development of Gradient Centrifugal Partition Chromatography Method and Its Application for the Isolation of 3,5-Dimethoxyphenanthrene-2,7-diol and Batatasin-1 from Dioscorea …
KD Yoon, MH Yang, YW Chin, YJ Kim, HR Kim, KR Choi, JH Park, JW Kim
Natural Product Sciences 15 (3), 144-150, 2009
libRoadRunner 2.0: a high performance SBML simulation and analysis library
C Welsh, J Xu, L Smith, M König, K Choi, HM Sauro
Bioinformatics 39 (1), btac770, 2023
The structural aspects of neural dynamics and information flow
JH Woo, K Choi, SH Kim, K Han, MY Choi
Frontiers in Bioscience-Landmark 27 (1), 15, 2022
Robust Approaches to Generating Reliable Predictive Models in Systems Biology
K Choi
Systems Biology, 301-312, 2018
Quantitative mapping of diffusion characteristics under the cortical surface
BB Koo, K Choi, I Ronen, JM Lee, DS Kim
Magnetic resonance imaging 28 (8), 1175-1182, 2010
Polymer physics-based classification of neurons
K Choi, WK Kim, C Hyeon
Neuroinformatics 21 (1), 177-193, 2023
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