| Tellurium: An extensible python-based modeling environment for systems and synthetic biology K Choi, JK Medley, M König, K Stocking, L Smith, S Gu, HM Sauro Biosystems 171, 74-79, 2018 | 93 | 2018 |
| Tellurium notebooks—An environment for reproducible dynamical modeling in systems biology JK Medley, K Choi, M König, L Smith, S Gu, J Hellerstein, SC Sealfon, ... PLOS Computational Biology 14 (6), e1006220, 2018 | 46 | 2018 |
| Synthetic biology open language (SBOL) version 2.2. 0 RS Cox III, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 20180001, 2018 | 34 | 2018 |
| Synthetic biology open language (SBOL) version 2.3 C Madsen, A Gońi Moreno, Z Palchick, N Roehner, C Atallah, B Bartley, ... Journal of integrative bioinformatics 16 (2), 20190025, 2019 | 28 | 2019 |
| Tellurium: a python based modeling and reproducibility platform for systems biology K Choi, JK Medley, C Cannistra, M Konig, L Smith, K Stocking, HM Sauro bioRxiv, 054601, 2016 | 26 | 2016 |
| Synthetic Biology Open Language (SBOL) Version 2.1. 0 J Beal, RS Cox, R Grünberg, J McLaughlin, T Nguyen, B Bartley, M Bissell, ... Journal of Integrative Bioinformatics 13 (3), 30-132, 2016 | 24 | 2016 |
| Recent advances in biomedical simulations: a manifesto for model engineering JL Hellerstein, S Gu, K Choi, H Sauro F1000Research 8, 2019 | 18 | 2019 |
| pySBOL: a python package for genetic design automation and standardization BA Bartley, K Choi, M Samineni, Z Zundel, T Nguyen, CJ Myers, ... ACS synthetic biology 8 (7), 1515-1518, 2018 | 16 | 2018 |
| phraSED-ML: A paraphrased, human-readable adaptation of SED-ML K Choi, LP Smith, JK Medley, HM Sauro Journal of bioinformatics and computational biology 14 (06), 1650035, 2016 | 16 | 2016 |
| Controlling E. coli gene expression noise KH Kim, K Choi, B Bartley, HM Sauro IEEE transactions on biomedical circuits and systems 9 (4), 497-504, 2015 | 13 | 2015 |
| BioSimulators: a central registry of simulation engines and services for recommending specific tools B Shaikh, LP Smith, D Vasilescu, G Marupilla, M Wilson, E Agmon, ... Nucleic acids research 50 (W1), W108-W114, 2022 | 5 | 2022 |
| Characterization of multiscale logic operations in the neural circuits JH Woo, K Choi, SH Kim, K Han, MY Choi Frontiers in Bioscience-Landmark 26 (10), 723-739, 2021 | 5 | 2021 |
| A portable structural analysis library for reaction networks Y Bedaso, FT Bergmann, K Choi, K Medley, HM Sauro Biosystems 169, 20-25, 2018 | 5 | 2018 |
| Inferring reaction networks using perturbation data K Choi, J Hellerstein, HS Wiley, HM Sauro bioRxiv, 351767, 2018 | 5 | 2018 |
| Development of Gradient Centrifugal Partition Chromatography Method and Its Application for the Isolation of 3,5-Dimethoxyphenanthrene-2,7-diol and Batatasin-1 from Dioscorea … KD Yoon, MH Yang, YW Chin, YJ Kim, HR Kim, KR Choi, JH Park, JW Kim Natural Product Sciences 15 (3), 144-150, 2009 | 4 | 2009 |
| libRoadRunner 2.0: a high performance SBML simulation and analysis library C Welsh, J Xu, L Smith, M König, K Choi, HM Sauro Bioinformatics 39 (1), btac770, 2023 | 2 | 2023 |
| The structural aspects of neural dynamics and information flow JH Woo, K Choi, SH Kim, K Han, MY Choi Frontiers in Bioscience-Landmark 27 (1), 15, 2022 | 2 | 2022 |
| Robust Approaches to Generating Reliable Predictive Models in Systems Biology K Choi Systems Biology, 301-312, 2018 | 2 | 2018 |
| Quantitative mapping of diffusion characteristics under the cortical surface BB Koo, K Choi, I Ronen, JM Lee, DS Kim Magnetic resonance imaging 28 (8), 1175-1182, 2010 | 2 | 2010 |
| Polymer physics-based classification of neurons K Choi, WK Kim, C Hyeon Neuroinformatics 21 (1), 177-193, 2023 | 1 | 2023 |
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
