| A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia N Baryawno, D Przybylski, MS Kowalczyk, Y Kfoury, N Severe, ... Cell 177 (7), 1915-1932. e16, 2019 | 457 | 2019 |
| Multivariable association discovery in population-scale meta-omics studies H Mallick, A Rahnavard, LJ McIver, S Ma, Y Zhang, LH Nguyen, TL Tickle, ... PLoS computational biology 17 (11), e1009442, 2021 | 343 | 2021 |
| COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Nature 595 (7865), 107-113, 2021 | 334 | 2021 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020.04. 19.049254, 2020 | 238 | 2020 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine, 1-14, 2021 | 201 | 2021 |
| Stability of the human faecal microbiome in a cohort of adult men RS Mehta, GS Abu-Ali, DA Drew, J Lloyd-Price, A Subramanian, ... Nature microbiology 3 (3), 347-355, 2018 | 179 | 2018 |
| Single-cell analysis of the normal mouse aorta reveals functionally distinct endothelial cell populations AS Kalluri, SK Vellarikkal, ER Edelman, L Nguyen, A Subramanian, ... Circulation 140 (2), 147-163, 2019 | 163 | 2019 |
| A practical guide to methods controlling false discoveries in computational biology K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome biology 20 (1), 1-21, 2019 | 159 | 2019 |
| Emergence of a high-plasticity cell state during lung cancer evolution ND Marjanovic, M Hofree, JE Chan, D Canner, K Wu, M Trakala, ... Cancer cell 38 (2), 229-246. e13, 2020 | 141 | 2020 |
| Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation A Subramanian, EH Sidhom, M Emani, K Vernon, N Sahakian, Y Zhou, ... Nature communications 10 (1), 5462, 2019 | 102 | 2019 |
| Deep learning and alignment of spatially resolved single-cell transcriptomes with Tangram T Biancalani, G Scalia, L Buffoni, R Avasthi, Z Lu, A Sanger, N Tokcan, ... Nature methods 18 (11), 1352-1362, 2021 | 101 | 2021 |
| Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function G Eraslan, E Drokhlyansky, S Anand, E Fiskin, A Subramanian, M Slyper, ... Science 376 (6594), eabl4290, 2022 | 61 | 2022 |
| Robust unmixing of tumor states in array comparative genomic hybridization data D Tolliver, C Tsourakakis, A Subramanian, S Shackney, R Schwartz Bioinformatics 26 (12), i106-i114, 2010 | 39 | 2010 |
| A high-content screen for mucin-1-reducing compounds identifies fostamatinib as a candidate for rapid repurposing for acute lung injury M Kost-Alimova, EH Sidhom, A Satyam, BT Chamberlain, M Dvela-Levitt, ... Cell Reports Medicine 1 (8), 100137, 2020 | 33 | 2020 |
| A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2 TM Delorey, CGK Ziegler, G Heimberg, R Normand, Y Yang, ... Biorxiv, 2021 | 28 | 2021 |
| ImmGen at 15 Nature Immunology 21 (7), 700-703, 2020 | 20 | 2020 |
| Inference of tumor phylogenies from genomic assays on heterogeneous samples A Subramanian, S Shackney, S Russell Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 20 | 2011 |
| A high content screen for mucin-1-reducing compounds identifies fostamatinib as a candidate for rapid repurposing for acute lung injury during the COVID-19 pandemic M Alimova, EH Sidhom, A Satyam, M Dvela-Levitt, M Melanson, ... bioRxiv, 2020 | 19 | 2020 |
| Retinoblastoma: expression of HLA-G M Adithi, M Kandalam, HL Ramkumar, A Subramanian, N Venkatesan, ... Ocular immunology and inflammation 14 (4), 207-213, 2006 | 18 | 2006 |
| Single-nucleus cross-tissue molecular reference maps to decipher disease gene function G Eraslan, E Drokhlyansky, S Anand, A Subramanian, E Fiskin, M Slyper, ... bioRxiv, 2021.07. 19.452954, 2021 | 17 | 2021 |
Russell SchwartzProfessor of Biological Sciences and Computational Biology, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
