Florent Lassalle
Florent Lassalle
Wellcome Sanger Institute
Verified email at sanger.ac.uk - Homepage
Title
Cited by
Cited by
Year
Inferring horizontal gene transfer
M Ravenhall, N Škunca, F Lassalle, C Dessimoz
PLoS computational biology 11 (5), e1004095, 2015
1962015
GC-content evolution in bacterial genomes: the biased gene conversion hypothesis expands
F Lassalle, S Périan, T Bataillon, X Nesme, L Duret, V Daubin
PLoS genetics 11 (2), e1004941, 2015
1742015
Genomic species are ecological species as revealed by comparative genomics in Agrobacterium tumefaciens
F Lassalle, T Campillo, L Vial, J Baude, D Costechareyre, D Chapulliot, ...
Genome Biology and Evolution 3, 762-781, 2011
1152011
Minimal standards for the description of new genera and species of rhizobia and agrobacteria
PM De Lajudie, M Andrews, J Ardley, B Eardly, E Jumas-Bilak, ...
International journal of systematic and evolutionary microbiology 69 (7 …, 2019
862019
Life in an Arsenic-Containing Gold Mine: Genome and Physiology of the Autotrophic Arsenite-Oxidizing Bacterium Rhizobium sp. NT-26
J Andres, F Arsene-Ploetze, V Barbe, C Brochier-Armanet, ...
Genome biology and evolution 5 (5), 934-953, 2013
722013
Improving the estimation of genetic distances from Next-Generation Sequencing data
FG Vieira, F Lassalle, TS Korneliussen, M Fumagalli
Biological journal of the Linnean Society 117 (1), 139-149, 2016
622016
Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes
F Lassalle, DP Depledge, MB Reeves, AC Brown, MT Christiansen, ...
Virus Evolution 2 (1), vew017, 2016
612016
Oral microbiomes from hunter‐gatherers and traditional farmers reveal shifts in commensal balance and pathogen load linked to diet
F Lassalle, M Spagnoletti, M Fumagalli, L Shaw, M Dyble, C Walker, ...
Molecular ecology 27 (1), 182-195, 2018
572018
Single acquisition of protelomerase gave rise to speciation of a large and diverse clade within the Agrobacterium/Rhizobium supercluster characterized by the presence of a …
MH Ramírez-Bahena, L Vial, F Lassalle, B Diel, D Chapulliot, V Daubin, ...
Molecular phylogenetics and evolution 73, 202-207, 2014
432014
Ecological speciation in bacteria: reverse ecology approaches reveal the adaptive part of bacterial cladogenesis
F Lassalle, D Muller, X Nesme
Research in microbiology 166 (10), 729-741, 2015
362015
Ancestral Genome Estimation Reveals the History of Ecological Diversification in Agrobacterium
F Lassalle, R Planel, S Penel, D Chapulliot, V Barbe, A Dubost, A Calteau, ...
Genome biology and evolution 9 (12), 3413-3431, 2017
222017
Diversity and evolution of surface polysaccharide synthesis loci in Enterobacteriales
KE Holt, F Lassalle, KL Wyres, R Wick, RJ Mostowy
The ISME journal 14 (7), 1713-1730, 2020
142020
TPMS: a set of utilities for querying collections of gene trees
T Bigot, V Daubin, F Lassalle, G Perriere
BMC bioinformatics 14 (1), 1-9, 2013
132013
Phylogenomics reveals the basis of adaptation of Pseudorhizobium species to extreme environments and supports a taxonomic revision of the genus
F Lassalle, SMM Dastgheib, FJ Zhao, J Zhang, S Verbarg, A Frühling, ...
Systematic and Applied Microbiology, 126165, 2020
10*2020
Coevolution of Sites under Immune Selection Shapes Epstein–Barr Virus Population Structure
F Wegner, F Lassalle, DP Depledge, F Balloux, J Breuer
Molecular biology and evolution 36 (11), 2512-2521, 2019
82019
Whole genome sequencing of Herpes Simplex Virus 1 directly from human cerebrospinal fluid reveals selective constraints in neurotropic viruses
F Lassalle, MA Beale, T Bharucha, CA Williams, RJ Williams, J Cudini, ...
Virus evolution 6 (1), veaa012, 2020
72020
Two Novel Genomospecies in the Agrobacterium tumefaciens Species Complex Associated with Rose Crown Gall
H Mafakheri, SM Taghavi, J Puławska, P de Lajudie, F Lassalle, ...
Phytopathology 109 (11), 1859-1868, 2019
72019
Automated reconstruction of all gene histories in large bacterial pangenome datasets and search for co-evolved gene modules with Pantagruel
F Lassalle, P Veber, E Jauneikaite, X Didelot
BioRxiv, 586495, 2019
42019
Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium
A Teulet, D Gully, Z Rouy, A Camuel, R Koebnik, E Giraud, F Lassalle
Microbial genomics 6 (9), 2020
32020
Les génomes bactériens, une histoire de transferts de genes, de recombinaison et de cladogénese
F Lassalle
Lyon 1, 2013
12013
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Articles 1–20