| Isolation of lactobacilli with probiotic properties from the human stomach KA Ryan, T Jayaraman, P Daly, C Canchaya, S Curran, F Fang, ... Letters in applied microbiology 47 (4), 269-274, 2008 | 106 | 2008 |
| Strain-specific inhibition of Helicobacter pylori by Lactobacillus salivarius and other lactobacilli KA Ryan, P Daly, Y Li, C Hooton, PW O'Toole Journal of Antimicrobial Chemotherapy 61 (4), 831-834, 2008 | 102 | 2008 |
| The role of carbon starvation in the induction of enzymes that degrade plant-derived carbohydrates in Aspergillus niger JM van Munster, P Daly, S Delmas, ST Pullan, MJ Blythe, S Malla, ... Fungal genetics and biology 72, 34-47, 2014 | 89 | 2014 |
| Seed priming and foliar application with jasmonic acid enhance salinity stress tolerance of soybean (Glycine max L.) seedlings MS Sheteiwy, H Shao, W Qi, P Daly, A Sharma, H Shaghaleh, ... Journal of the Science of Food and Agriculture, 2020 | 56 | 2020 |
| Transcriptomic responses of mixed cultures of ascomycete fungi to lignocellulose using dual RNA-seq reveal inter-species antagonism and limited beneficial effects on CAZyme … P Daly, JM van Munster, M Kokolski, F Sang, MJ Blythe, S Malla, ... Fungal Genetics and Biology 102, 4-21, 2017 | 32 | 2017 |
| RNA-sequencing reveals the complexities of the transcriptional response to lignocellulosic biofuel substrates in Aspergillus niger ST Pullan, P Daly, S Delmas, R Ibbett, M Kokolski, A Neiteler, ... Fungal biology and biotechnology 1, 1-14, 2014 | 32 | 2014 |
| Induction of plant cell wall degrading CAZyme encoding genes by lignocellulose-derived monosaccharides and cellobiose in the white-rot fungus Dichomitus squalens SC López, M Peng, TY Issak, P Daly, RP de Vries, MR Mäkelä Applied and Environmental Microbiology, AEM. 00403-18, 2018 | 29* | 2018 |
| RNA i‐suppression of barley caffeic acid O‐methyltransferase modifies lignin despite redundancy in the gene family P Daly, C McClellan, M Maluk, H Oakey, C Lapierre, R Waugh, ... Plant Biotechnology Journal, 2018 | 29 | 2018 |
| Dichomitus squalens partially tailors its molecular responses to the composition of solid wood P Daly, S Casado López, M Peng, CS Lancefield, SO Purvine, YM Kim, ... Environmental Microbiology, 2018 | 24 | 2018 |
| ARA1 regulates not only L-arabinose but also D-galactose catabolism in Trichoderma reesei T Benocci, MV Aguilar-Pontes, RS Kun, B Seiboth, RP de Vries, P Daly FEBS Letters, 2017 | 21 | 2017 |
| From lignocellulose to plastics: Knowledge transfer on the degradation approaches by fungi P Daly, F Cai, CP Kubicek, S Jiang, M Grujic, MJ Rahimi, MS Sheteiwy, ... Biotechnology advances 50, 107770, 2021 | 20 | 2021 |
| Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments P Daly, JM Van Munster, MJ Blythe, R Ibbett, M Kokolski, S Gaddipati, ... biotechnology for biofuels 10 (1), 1-19, 2017 | 16 | 2017 |
| Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation P Daly, M Peng, HD Mitchell, YM Kim, C Ansong, H Brewer, P De Gijsel, ... Environmental Microbiology 22 (3), 1154-1166, 2020 | 14 | 2020 |
| Glucose-mediated repression of plant biomass utilization in the white-rot fungus Dichomitus squalens P Daly, M Peng, MD Falco, A Lipzen, M Wang, V Ng, IV Grigoriev, ... Applied and Environmental Microbiology, 2019 | 13 | 2019 |
| Draft genome sequences of three monokaryotic isolates of the white-rot basidiomycete fungus Dichomitus squalens S Casado López, M Peng, P Daly, B Andreopoulos, J Pangilinan, ... Microbiology resource announcements 8 (18), e00264-19, 2019 | 13 | 2019 |
| Enzymatic adaptation of Podospora anserina to different plant biomass provides leads to optimized commercial enzyme cocktails T Benocci, P Daly, MV Aguilar Pontes, K Lail, M Wang, A Lipzen, V Ng, ... Biotechnology Journal, 1800185, 2018 | 12 | 2018 |
| Transcriptional regulation and responses in filamentous fungi exposed to lignocellulose P Daly, JM van Munster, R Raulo, DB Archer Silva R, editor. Fungal Biotechnology for Biofuels. Sharjah, UAE: Bentham …, 2016 | 12 | 2016 |
| CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner M Peng, C Khosravi, RJM Lubbers, RS Kun, MVA Pontes, E Battaglia, ... The Cell Surface 7, 100050, 2021 | 10 | 2021 |
| Genetic transformation of the white-rot fungus Dichomitus squalens using a new commercial protoplasting cocktail P Daly, GG Slaghek, SC López, A Wiebenga, KS Hilden, RP de Vries, ... Journal of microbiological methods 143, 38-43, 2017 | 10 | 2017 |
| Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass T Benocci, MV Aguilar-Pontes, RS Kun, RJM Lubbers, K Lail, M Wang, ... Biotechnology for biofuels 12 (1), 1-20, 2019 | 9 | 2019 |
