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Marco Oliva
Marco Oliva
Computer and Information Science and Engineering, University of Florida
Verified email at ufl.edu
Title
Cited by
Cited by
Year
MONI: A Pangenomic Index for Finding Maximal Exact Matches
M Rossi, M Oliva, B Langmead, T Gagie, C Boucher
Journal of Computational Biology 29 (2), 169-187, 2022
512022
Portable nanopore analytics: are we there yet?
M Oliva, F Milicchio, K King, G Benson, C Boucher, M Prosperi
Bioinformatics 36 (16), 4399-4405, 2020
222020
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data
S Marini, M Oliva, IB Slizovskiy, RA Das, NR Noyes, T Kahveci, C Boucher, ...
GigaScience 11, giac029, 2022
102022
MONI: A pangenomics index for finding MEMs
M Rossi, M Oliva, B Langmead, T Gagie, C Boucher
102021
Target-enriched long-read sequencing (TELSeq) contextualizes antimicrobial resistance genes in metagenomes
IB Slizovskiy, M Oliva, JK Settle, LV Zyskina, M Prosperi, C Boucher, ...
Microbiome 10 (1), 185, 2022
82022
Finding Maximal Exact Matches Using the r-Index
M Rossi, M Oliva, P Bonizzoni, B Langmead, T Gagie, C Boucher
Journal of Computational Biology 29 (2), 188-194, 2022
82022
Third-generation sequencing data analytics on mobile devices: cache oblivious and out-of-core approaches as a proof-of-concept
F Milicchio, M Oliva, C Boucher, M Prosperi
Procedia computer science 134, 219-226, 2018
72018
Recursive Prefix-Free Parsing for Building Big BWTs
M Oliva, T Gagie, C Boucher
2023 Data Compression Conference (DCC), 62-70, 2023
62023
CSTs for Terabyte-Sized Data
M Oliva, D Cenzato, M Rossi, Z Lipták, T Gagie, C Boucher
2022 Data Compression Conference (DCC), 93-102, 2022
42022
Efficiently Merging r-indexes
M Oliva, M Rossi, J Sirén, G Manzini, T Kahveci, T Gagie, C Boucher
2021 Data Compression Conference (DCC), 203-212, 2021
32021
Exploring prediction of antimicrobial resistance based on protein solvent accessibility variation
S Marini, M Oliva, IB Slizovskiy, NR Noyes, C Boucher, M Prosperi
Frontiers in genetics 12, 564186, 2021
22021
Acceleration of FM-index Queries Through Prefix-free Parsing
A Hong, M Oliva, D Köppl, H Bannai, C Boucher, T Gagie
arXiv preprint arXiv:2305.05893, 2023
12023
An interleaved hardware-accelerated k-mer parser
F Milicchio, M Oliva, M Prosperi
2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2022
12022
Building a Pangenome Alignment Index via Recursive Prefix-Free Parsing
M Oliva, T Gagie, C Boucher
bioRxiv, 2023.01. 26.525723, 2023
2023
Finding MEMs with the RLBWT
C Boucher, T Gagie, M Oliva, M Rossi
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