Multi-class and multi-scale models of complex biological phenomena JS Yu, N Bagheri Current Opinion in Biotechnology 39, 167-173, 2016 | 52 | 2016 |
A support vector machine model provides an accurate transcript-level-based diagnostic for major depressive disorder JS Yu, AY Xue, EE Redei, N Bagheri Translational Psychiatry 6 (10), e931, 2016 | 41 | 2016 |
Agent-based models predict emergent behavior of heterogeneous cell populations in dynamic microenvironments JS Yu, N Bagheri Frontiers in Bioengineering and Biotechnology 8 (249), 2020 | 36 | 2020 |
CellSort: A support vector machine tool for optimizing fluorescence-activated cell sorting and reducing experimental effort JS Yu, DA Pertusi, AV Adeniran, KEJ Tyo Bioinformatics, btw710, 2016 | 15 | 2016 |
Network inference performance complexity: a consequence of topological, experimental, and algorithmic determinants JJ Muldoon, JS Yu, MK Fassia, N Bagheri Bioinformatics 35 (18), 3421-3432, 2019 | 14 | 2019 |
Modulating and evaluating receptor promiscuity through directed evolution and modeling SC Stainbrook, JS Yu, MP Reddick, N Bagheri, KEJ Tyo Protein Engineering, Design and Selection 30 (6), 455-465, 2017 | 13 | 2017 |
Mapping CAR T-cell design space using agent-based models AN Prybutok, JS Yu, JN Leonard, N Bagheri bioRxiv, 2022 | 10 | 2022 |
Modular microenvironment components reproduce vascular dynamics de novo in a multi-scale agent-based model JS Yu, N Bagheri Cell Systems, 2021 | 10 | 2021 |
The in silico lab: Improving academic code using lessons from biology JY Cain, SY Jessica, N Bagheri Cell Systems 14 (1), 1-6, 2023 | | 2023 |
Agent-Based Modeling JS Yu, N Bagheri Systems Medicine: Integrative, Qualitative and Computational Approaches 3, 56-67, 2021 | | 2021 |