STopTox: An in Silico Alternative to Animal Testing for Acute Systemic and Topical Toxicity JVB Borba, VM Alves, RC Braga, DR Korn, K Overdahl, AC Silva, ... Environmental Health Perspectives 130 (2), 027012, 2022 | 91 | 2022 |
QSAR Modeling of SARS‐CoV Mpro Inhibitors Identifies Sufugolix, Cenicriviroc, Proglumetacin, and other Drugs as Candidates for Repurposing against SARS … VM Alves, T Bobrowski, CC Melo‐Filho, D Korn, S Auerbach, C Schmitt, ... Molecular Informatics 40 (1), 2000113, 2021 | 78 | 2021 |
Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science DR Unni, SAT Moxon, M Bada, M Brush, R Bruskiewich, JH Caufield, ... Clinical and translational science 15 (8), 1848-1855, 2022 | 66 | 2022 |
Multi-descriptor read across (MuDRA): A simple and transparent approach for developing accurate quantitative structure–activity relationship models VM Alves, A Golbraikh, SJ Capuzzi, K Liu, WI Lam, DR Korn, D Pozefsky, ... Journal of chemical information and modeling 58 (6), 1214-1223, 2018 | 55 | 2018 |
Learning from history: do not flatten the curve of antiviral research! T Bobrowski, CC Melo-Filho, D Korn, VM Alves, KI Popov, S Auerbach, ... Drug Discovery Today 25 (9), 1604-1613, 2020 | 41 | 2020 |
Knowledge-based approaches to drug discovery for rare diseases VM Alves, D Korn, V Pervitsky, A Thieme, SJ Capuzzi, N Baker, ... Drug Discovery Today 27 (2), 490-502, 2022 | 37 | 2022 |
SCAM detective: accurate predictor of small, colloidally aggregating molecules VM Alves, SJ Capuzzi, RC Braga, D Korn, JE Hochuli, KH Bowler, ... Journal of Chemical Information and Modeling 60 (8), 4056-4063, 2020 | 30 | 2020 |
Progress toward a universal biomedical data translator K Fecho, AE Thessen, SE Baranzini, C Bizon, JJ Hadlock, S Huang, ... Clinical and Translational Science 15 (8), 1838-1847, 2022 | 29 | 2022 |
COVID-KOP: integrating emerging COVID-19 data with the ROBOKOP database D Korn, T Bobrowski, M Li, Y Kebede, P Wang, P Owen, G Vaidya, ... Bioinformatics 37 (4), 586-587, 2021 | 25 | 2021 |
Computational models identify several FDA approved or experimental drugs as putative agents against SARS-CoV-2 T Bobrowski, VM Alves, CC Melo-Filho, D Korn, S Auerbach, C Schmitt, ... ChemRxiv, 2020 | 21 | 2020 |
Defining clinical outcome pathways D Korn, AJ Thieme, VM Alves, M Yeakey, JVVB Borba, SJ Capuzzi, ... Drug Discovery Today 27 (6), 1671-1678, 2022 | 12 | 2022 |
ZINC express: a virtual assistant for purchasing compounds annotated in the ZINC database TM Bobrowski, DR Korn, EN Muratov, A Tropsha Journal of Chemical Information and Modeling 61 (3), 1033-1036, 2021 | 7 | 2021 |
Compact walks: Taming knowledge-graph embeddings with domain-and task-specific pathways PY Hou, DR Korn, CC Melo-Filho, DR Wright, A Tropsha, R Chirkova Proceedings of the 2022 International Conference on Management of Data, 458-469, 2022 | 6 | 2022 |
Small molecule antiviral compound collection (SMACC): A comprehensive, highly curated database to support the discovery of broad-spectrum antiviral drug molecules HJ Martin, CC Melo-Filho, D Korn, RT Eastman, G Rai, A Simeonov, ... Antiviral Research 217, 105620, 2023 | 5 | 2023 |
PreS/MD: Predictor of sensitization hazard for chemical substances released from medical devices VM Alves, JVB Borba, RC Braga, DR Korn, N Kleinstreuer, K Causey, ... Toxicological Sciences 189 (2), 250-259, 2022 | 4 | 2022 |
COVID-19 Knowledge Extractor (COKE): A Curated Repository of Drug–Target Associations Extracted from the CORD-19 Corpus of Scientific Publications on COVID-19 D Korn, V Pervitsky, T Bobrowski, VM Alves, C Schmitt, C Bizon, N Baker, ... Journal of Chemical Information and Modeling 61 (12), 5734-5741, 2021 | 4 | 2021 |
Towards a standard benchmark for variant and gene prioritisation algorithms: PhEval-Phenotypic inference Evaluation framework Y Bridges, V de Souza, KG Cortes, M Haendel, NL Harris, DR Korn, ... bioRxiv, 2024 | 3 | 2024 |
Integrated approach to elucidate metal-implant related adverse outcome pathways JMT Beasley, DR Korn, KI Popov, RL Dumproff, ZL Sessions, MK Rath, ... Regulatory Toxicology and Pharmacology 136, 105277, 2022 | 3 | 2022 |
Small Molecule Antiviral Compound Collection (SMACC): a database to support the discovery of broad-spectrum antiviral drug molecules HJ Martin, CC Melo-Filho, D Korn, RT Eastman, G Rai, A Simeonov, ... bioRxiv, 2022 | 3 | 2022 |
User-Interfaces for Incremental Recipient and Response Time Predictions in Asynchronous Messaging C Hamlet, D Korn, N Prasad, V Siedlecki, E Encarnacion, J Bartel, ... Companion Proceedings of the 20th International Conference on Intelligent …, 2015 | 3 | 2015 |