Dr. Aditya Kumar Padhi
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Design of a peptide-based subunit vaccine against novel coronavirus SARS-CoV-2
P Kalita, AK Padhi, KYJ Zhang, T Tripathi
Microbial Pathogenesis 145, 104236, 2020
High-throughput rational design of the remdesivir binding site in the RdRp of SARS-CoV-2: implications for potential resistance
AK Padhi, R Shukla, P Saudagar, T Tripathi
Iscience 24 (1), 2021
Unraveling the mechanism of arbidol binding and inhibition of SARS-CoV-2: Insights from atomistic simulations
AK Padhi, A Seal, JM Khan, M Ahamed, T Tripathi
European journal of pharmacology 894, 173836, 2021
Development of multi-epitope driven subunit vaccine against Fasciola gigantica using immunoinformatics approach
P Kalita, DL Lyngdoh, AK Padhi, H Shukla, T Tripathi
International journal of biological macromolecules 138, 224-233, 2019
Can SARS-CoV-2 accumulate mutations in the S-protein to increase pathogenicity?
AK Padhi, T Tripathi
ACS Pharmacology & Translational Science 3 (5), 1023-1026, 2020
Accelerating COVID-19 research using molecular dynamics simulation
AK Padhi, SL Rath, T Tripathi
The Journal of Physical Chemistry B 125 (32), 9078-9091, 2021
Mechanisms of loss of functions of human angiogenin variants implicated in amyotrophic lateral sclerosis
AK Padhi, H Kumar, SV Vasaikar, B Jayaram, J Gomes
PLoS One 7 (2), e32479, 2012
Prediction of functional loss of human angiogenin mutants associated with ALS by molecular dynamics simulations
AK Padhi, B Jayaram, J Gomes
Scientific reports 3 (1), 1225, 2013
Scanning the RBD-ACE2 molecular interactions in Omicron variant
SL Rath, AK Padhi, M Nabanita
Biochemical and Biophysical Research Communications 592, 18-23, 2022
A variant in human AIOLOS impairs adaptive immunity by interfering with IKAROS
M Yamashita, HS Kuehn, K Okuyama, S Okada, Y Inoue, N Mitsuiki, ...
Nature immunology 22 (7), 893-903, 2021
The VP4 peptide of hepatitis A virus ruptures membranes through formation of discrete pores
A Shukla, AK Padhi, J Gomes, M Banerjee
Journal of virology 88 (21), 12409-12421, 2014
NeuroDNet-an open source platform for constructing and analyzing neurodegenerative disease networks
SV Vasaikar, AK Padhi, B Jayaram, J Gomes
BMC neuroscience 14, 1-13, 2013
Interface‐based design of the favipiravir‐binding site in SARS‐CoV‐2 RNA‐dependent RNA polymerase reveals mutations conferring resistance to chain termination
AK Padhi, J Dandapat, P Saudagar, VN Uversky, T Tripathi
FEBS letters 595 (18), 2366-2382, 2021
Hotspot residues and resistance mutations in the nirmatrelvir-binding site of SARS-CoV-2 main protease: Design, identification, and correlation with globally circulating viral …
AK Padhi, T Tripathi
Biochemical and Biophysical Research Communications 629, 54-60, 2022
Targeted design of drug binding sites in the main protease of SARS-CoV-2 reveals potential signatures of adaptation
AK Padhi, T Tripathi
Biochemical and biophysical research communications 555, 147-153, 2021
Molecular insights into the differential dynamics of SARS-CoV-2 variants of concern
N Mandal, AK Padhi, SL Rath
Journal of Molecular Graphics and Modelling 114, 108194, 2022
Identification and characterization of novel and rare susceptible variants in Indian amyotrophic lateral sclerosis patients
P Narain, AK Padhi, U Dave, D Mishra, R Bhatia, P Vivekanandan, ...
Neurogenetics 20 (4), 197-208, 2019
Seven amino acid types suffice to create the core fold of RNA polymerase
S Yagi, AK Padhi, J Vucinic, S Barbe, T Schiex, R Nakagawa, D Simoncini, ...
Journal of the American Chemical Society 143 (39), 15998-16006, 2021
Computational and functional characterization of angiogenin mutations, and correlation with amyotrophic lateral sclerosis
AK Padhi, K Banerjee, J Gomes, M Banerjee
PLoS One 9 (11), e111963, 2014
High throughput designing and mutational mapping of RBD-ACE2 interface guide non-conventional therapeutic strategies for COVID-19
AK Padhi, P Kalita, KYJ Zhang, T Tripathi
BioRxiv, 2020.05. 19.104042, 2020
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