Alexander Artyomenko
Alexander Artyomenko
Bioinformatics Scientist at Guardant Health Inc.
Verified email at guardanthealth.com
Title
Cited by
Cited by
Year
Validation of microsatellite instability detection using a comprehensive plasma-based genotyping panel
J Willis, MI Lefterova, A Artyomenko, PM Kasi, Y Nakamura, K Mody, ...
Clinical Cancer Research 25 (23), 7035-7045, 2019
682019
Reconstruction of viral population structure from next-generation sequencing data using multicommodity flows
P Skums, N Mancuso, A Artyomenko, B Tork, I Mandoiu, Y Khudyakov, ...
BMC bioinformatics 14 (9), 1-13, 2013
362013
Long single-molecule reads can resolve the complexity of the influenza virus composed of rare, closely related mutant variants
A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky
Journal of Computational Biology 24 (6), 558-570, 2017
212017
Cliquesnv: Scalable reconstruction of intra-host viral populations from ngs reads
S Knyazev, V Tsyvina, A Melnyk, A Artyomenko, T Malygina, YB Porozov, ...
BioRxiv, 264242, 2018
202018
Inference of genetic relatedness between viral quasispecies from sequencing data
O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ...
BMC genomics 18 (10), 81-88, 2017
202017
Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling
P Skums, A Artyomenko, O Glebova, S Ramachandran, I Mandoiu, ...
Bioinformatics 31 (5), 682-690, 2015
172015
kgem: An em-based algorithm for local reconstruction of viral quasispecies
A Artyomenko, N Mancuso, A Zelikovsky, P Skums, I Măndoiu
2013 IEEE 3rd International Conference on Computational Advances in Bio and …, 2013
72013
CliqueSNV: an efficient noise reduction technique for accurate assembly of viral variants from NGS data
S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ...
bioRxiv, 264242, 2020
62020
Error correction of ngs reads from viral populations
P Skums, A Artyomenko, O Glebova, DS Campo, Z Dimitrova, ...
Computational Methods for Next Generation Sequencing Data Analysis, 329-353, 2016
52016
Assessment of HCV infection stage as recent or chronic using multi-parameter analysis and machine learning
PI Baykal, A Artyomenko, S Ramachandran, Y Khudyakov, A Zelikovsky, ...
2017 IEEE 7th International Conference on Computational Advances in Bio and …, 2017
42017
kgem: An expectation maximization error correction algorithm for next generation sequencing of amplicon-based data
A Artyomenko, N Mancuso, P Skums, I Mandoiu, A Zelikovsky
Proc. International Symposium Bioinformatics Research and Applications, 2013
42013
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ...
Nucleic acids research 49 (17), e102-e102, 2021
32021
Microsatellite instability detection by targeted sequencing of cell-free DNA
A Artyomenko, M Sikora, M Lefterova, VM Raymond, D Gavino, ...
Annals of Oncology 29, viii424, 2018
32018
Analytical validation of MSI high detection with GuardantOMNI
J Zhao, A Artyomenko, C Artieri, J Latham, SR Fairclough, C Barbacioru, ...
Cancer Research 79 (13 Supplement), 1675-1675, 2019
22019
Reconstruction of infectious bronchitis virus quasispecies from ngs data
B Tork, E Nenastyeva, A Artyomenko, N Mancuso, MI Khan, R O’Neill, ...
Computational Methods for Next Generation Sequencing Data Analysis, 383-400, 2016
22016
2SNV: Quasispecies reconstruction from PacBio reads
A Artyomenko, NC Wu, S Mangul, E Eskin, R Sun, A Zelikovsky
2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015
22015
Detection of genetic relatedness between viral samples using EM-based clustering of next-generation sequencing data
P Skums, A Artyomenko, O Glebova, A Zelikovsky, DS Campo, ...
2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014
22014
Deterministic regression algorithm for transcriptome frequency estimation
A Caciula, O Glebova, A Artyomenko, S Mangul, J Lindsay, II Măndoiu, ...
2014 IEEE 4th International Conference on Computational Advances in Bio and …, 2014
22014
Transcriptome Quantification and Differential Expression from NGS Data
O Glebova, Y Temate-Tiagueu, A Caciula, S Al Seesi, A Artyomenko, ...
Computational Methods for Next Generation Sequencing Data Analysis, 301-327, 2016
12016
Pooling Strategy for Massive Viral Sequencing
P Skums, A Artyomenko, O Glebova, S Ramachandran, DS Campo, ...
Computational Methods for Next Generation Sequencing Data Analysis, 57-83, 2016
12016
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