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Arianna Basile
Arianna Basile
MRC Toxicology Unit - University of Cambridge
Verified email at cam.ac.uk - Homepage
Title
Cited by
Cited by
Year
New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters
S Campanaro, L Treu, LM Rodriguez-R, A Kovalovszki, RM Ziels, I Maus, ...
Biotechnology for biofuels 13, 1-18, 2020
172*2020
Genome-centric metatranscriptomics analysis reveals the role of hydrochar in anaerobic digestion of waste activated sludge
Z Shi, S Campanaro, M Usman, L Treu, A Basile, I Angelidaki, S Zhang, ...
Environmental science & technology 55 (12), 8351-8361, 2021
712021
Insights into ammonia adaptation and methanogenic precursor oxidation by genome-centric analysis
M Yan, L Treu, X Zhu, H Tian, A Basile, IA Fotidis, S Campanaro, ...
Environmental science & technology 54 (19), 12568-12582, 2020
622020
Genomic comparison of Lactobacillus helveticus strains highlights probiotic potential
A Fontana, I Falasconi, P Molinari, L Treu, A Basile, A Vezzi, ...
Frontiers in Microbiology 10, 449552, 2019
492019
Revealing metabolic mechanisms of interaction in the anaerobic digestion microbiome by flux balance analysis
A Basile, S Campanaro, A Kovalovszki, G Zampieri, A Rossi, I Angelidaki, ...
Metabolic Engineering 62, 138-149, 2020
432020
Advances in constraint-based modelling of microbial communities
A Heinken, A Basile, I Thiele
Current Opinion in Systems Biology 27, 100346, 2021
402021
Genome-scale metabolic modeling of the human microbiome in the era of personalized medicine
A Heinken, A Basile, J Hertel, C Thinnes, I Thiele
Annual review of microbiology 75, 199-222, 2021
392021
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation
N De Bernardini, A Basile, G Zampieri, A Kovalovszki, B De Diego Diaz, ...
Microbiome 10 (1), 117, 2022
282022
New insights into the variability of lactic acid production in Lachancea thermotolerans at the phenotypic and genomic level
V Gatto, RL Binati, WJFL Junior, A Basile, L Treu, OGG de Almeida, ...
Microbiological Research 238, 126525, 2020
272020
KEMET–A python tool for KEGG Module evaluation and microbial genome annotation expansion
M Palù, A Basile, G Zampieri, L Treu, A Rossi, MS Morlino, S Campanaro
Computational and Structural Biotechnology Journal 20, 1481-1486, 2022
142022
Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction
A Rossi, MS Morlino, M Gaspari, A Basile, P Kougias, L Treu, ...
Microbiome 10 (1), 125, 2022
112022
Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes
A Basile, F De Pascale, F Bianca, A Rossi, M Frizzarin, N De Bernardini, ...
Food Microbiology 97, 103753, 2021
112021
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics
A Basile, A Heinken, J Hertel, L Smarr, W Li, L Treu, G Valle, ...
Gut microbes 15 (1), 2226921, 2023
9*2023
Modelling of microbial interactions in anaerobic digestion: From black to glass box
A Basile, G Zampieri, A Kovalovszki, B Karkaria, L Treu, KR Patil, ...
Current Opinion in Microbiology 75, 102363, 2023
42023
Microbiome structure in biofilms from a volcanic island in Maritime Antarctica investigated by genome-centric metagenomics and metatranscriptomics
VB Centurion, S Campanaro, A Basile, L Treu, VM Oliveira
Microbiological Research 265, 127197, 2022
42022
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation. Microbiome. 2022; 10: 117
N De Bernardini, A Basile, G Zampieri, A Kovalovszki, B De Diego Diaz, ...
4
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites
A Heinken, TO Hulshof, B Nap, F Martinelli, A Basile, A O'Brolchain, ...
bioRxiv, 2023
32023
A unified compendium of prokaryotic and viral genomes from over 300 anaerobic digestion microbiomes
VB Centurion, A Rossi, E Orellana, G Ghiotto, B Kakuk, MS Morlino, ...
Environmental Microbiome 19 (1), 1, 2024
22024
A new metabolic model of Drosophila melanogaster and the integrative analysis of Parkinson’s disease
MF Cesur, A Basile, KR Patil, T Çakır
Life Science Alliance 6 (8), 2023
2023
NEMETEX: a Python software for the visualisation of the network of metabolic exchanges
M Palamin, A Frisinghelli, E Offer, G Zampieri, A Basile, S Campanaro
bioRxiv, 2022.10. 19.492777, 2022
2022
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