| Comprehensive molecular profiling of lung adenocarcinoma Cancer Genome Atlas Research Network Nature 511 (7511), 543, 2014 | 4853* | 2014 |
| Comprehensive molecular characterization of clear cell renal cell carcinoma Cancer Genome Atlas Research Network Analysis working group: Baylor College ... Nature 499 (7456), 43-49, 2013 | 3781* | 2013 |
| Visualizing and interpreting cancer genomics data via the Xena platform MJ Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... Nature biotechnology 38 (6), 675-678, 2020 | 2932 | 2020 |
| A next generation connectivity map: L1000 platform and the first 1,000,000 profiles A Subramanian, R Narayan, SM Corsello, DD Peck, TE Natoli, X Lu, ... Cell 171 (6), 1437-1452. e17, 2017 | 2872 | 2017 |
| The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs P Schattner, AN Brooks, TM Lowe Nucleic acids research 33 (suppl_2), W686-W689, 2005 | 2335 | 2005 |
| Evolution of genes and genomes on the Drosophila phylogeny AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ... Nature 450 (7167), 203-18, 2007 | 2271 | 2007 |
| Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing M Imielinski, AH Berger, PS Hammerman, B Hernandez, TJ Pugh, ... Cell 150 (6), 1107-1120, 2012 | 2053 | 2012 |
| Pan-cancer analysis of whole genomes Nature 578 (7793), 82-93, 2020 | 1936* | 2020 |
| The developmental transcriptome of Drosophila melanogaster BR Graveley, AN Brooks, JW Carlson, MO Duff, JM Landolin, L Yang, ... Nature 471 (7339), 473-479, 2011 | 1716 | 2011 |
| Structural basis for double-stranded RNA processing by Dicer IJ MacRae, K Zhou, F Li, A Repic, AN Brooks, WZ Cande, PD Adams, ... Science 311 (5758), 195-198, 2006 | 1336 | 2006 |
| Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas JD Campbell, A Alexandrov, J Kim, J Wala, AH Berger, CS Pedamallu, ... Nature genetics 48 (6), 607-616, 2016 | 1201 | 2016 |
| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1105 | 2010 |
| Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... Nature methods 16 (12), 1297-1305, 2019 | 637 | 2019 |
| The UCSC Xena platform for public and private cancer genomics data visualization and interpretation M Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... biorxiv, 326470, 2018 | 570 | 2018 |
| Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns AD Tang, CM Soulette, MJ van Baren, K Hart, E Hrabeta-Robinson, ... Nature communications 11 (1), 1438, 2020 | 393 | 2020 |
| Genomic basis for RNA alterations in cancer PCAWG Transcriptome Core Group Calabrese Claudia 2 Davidson Natalie R. 3 4 5 ... Nature 578 (7793), 129-136, 2020 | 304 | 2020 |
| Conservation of an RNA regulatory map between Drosophila and mammals AN Brooks, L Yang, MO Duff, KD Hansen, JW Park, S Dudoit, SE Brenner, ... Genome research 21 (2), 193-202, 2011 | 296 | 2011 |
| The coupling of alternative splicing and nonsense-mediated mRNA decay LF Lareau, AN Brooks, DAW Soergel, Q Meng, SE Brenner Alternative splicing in the Postgenomic Era, 190-211, 2007 | 281 | 2007 |
| High-throughput phenotyping of lung cancer somatic mutations AH Berger, AN Brooks, X Wu, Y Shrestha, C Chouinard, F Piccioni, ... Cancer cell 30 (2), 214-228, 2016 | 230 | 2016 |
| Transcriptomic characterization of SF3B1 mutation reveals its pleiotropic effects in chronic lymphocytic leukemia L Wang, AN Brooks, J Fan, Y Wan, R Gambe, S Li, S Hergert, S Yin, ... Cancer cell 30 (5), 750-763, 2016 | 225 | 2016 |
