Prediction of 492 human protein kinase substrate specificities J Safaei, J Maňuch, A Gupta, L Stacho, S Pelech Proteome science 9, 1-13, 2011 | 89 | 2011 |

Two lower bounds for self-assemblies at temperature 1 J Maňuch, L Stacho, C Stoll Proceedings of the 2009 ACM symposium on Applied Computing, 808-809, 2009 | 40 | 2009 |

Structure-approximating inverse protein folding problem in the 2D HP model A Gupta, J Maňuch, L Stacho Journal of Computational Biology 12 (10), 1328-1345, 2005 | 36 | 2005 |

Linearization of ancestral multichromosomal genomes J Maňuch, M Patterson, R Wittler, C Chauve, E Tannier BMC bioinformatics 13 (19), 1-11, 2012 | 34 | 2012 |

Characterization of a word by its subwords J Maňuch Developments in Language Theory: Foundations, Applications, and Perspectives …, 2000 | 33 | 2000 |

Less haste, less waste: on recycling and its limits in strand displacement systems A Condon, AJ Hu, J Maňuch, C Thachuk Interface Focus 2 (4), 512-521, 2012 | 30 | 2012 |

An algorithm for the energy barrier problem without pseudoknots and temporary arcs C Thachuk, J Maňuch, A Rafiey, LA Mathieson, L Stacho, A Condon Biocomputing 2010, 108-119, 2010 | 27 | 2010 |

Fitting protein chains to cubic lattice is NP-complete JÁN MAŇUCH, DR Gaur Journal of bioinformatics and computational biology 6 (01), 93-106, 2008 | 27 | 2008 |

Approximate majority analyses using tri-molecular chemical reaction networks A Condon, M Hajiaghayi, D Kirkpatrick, J Maňuch Natural Computing 19 (1), 249-270, 2020 | 25 | 2020 |

NP-completeness of the energy barrier problem without pseudoknots and temporary arcs J Maňuch, C Thachuk, L Stacho, A Condon Natural Computing 10, 391-405, 2011 | 23 | 2011 |

The odd-distance plane graph H Ardal, J Maňuch, M Rosenfeld, S Shelah, L Stacho Discrete & Computational Geometry 42 (2), 132-141, 2009 | 22 | 2009 |

Turing universality of step-wise and stage assembly at temperature 1 B Behsaz, J Maňuch, L Stacho DNA Computing and Molecular Programming: 18th International Conference, DNA …, 2012 | 19 | 2012 |

The complexity of string partitioning A Condon, J Maňuch, C Thachuk Journal of Discrete Algorithms 32, 24-43, 2015 | 18 | 2015 |

Step-wise tile assembly with a constant number of tile types J Maňuch, L Stacho, C Stoll Natural Computing 11, 535-550, 2012 | 18 | 2012 |

On the gapped consecutive-ones property C Chauve, J Maňuch, M Patterson Electronic Notes in Discrete Mathematics 34, 121-125, 2009 | 18 | 2009 |

NP-completeness of the direct energy barrier problem without pseudoknots J Maňuch, C Thachuk, L Stacho, A Condon DNA Computing and Molecular Programming: 15th International Conference, DNA …, 2009 | 17 | 2009 |

Consistency of sequence-based gene clusters R Wittler, J Maňuch, M Patterson, J Stoye Journal of Computational Biology 18 (9), 1023-1039, 2011 | 15 | 2011 |

A defect theorem for bi-infinite words J Karhumäki, J Maňuch, W Plandowski Theoretical computer science 292 (1), 237-243, 2003 | 15 | 2003 |

On defect effect of bi-infinite words J Karhumäki, J Maňuch, W Plandowski International Symposium on Mathematical Foundations of Computer Science, 674-682, 1998 | 15 | 1998 |

Combinatorial RNA design: designability and structure-approximating algorithm in Watson–Crick and Nussinov–Jacobson energy models J Haleš, A Héliou, J Maňuch, Y Ponty, L Stacho Algorithmica 79 (3), 835-856, 2017 | 14 | 2017 |