Costas D. Maranas

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Anthony P. BurgardNational Energy Technology LaboratoryVerified email at netl.doe.gov
Christodoulos A. FloudasDirector, Texas A&M Energy Institute, Erle Nye '59 Chair Professor for Engineering ExcellenceVerified email at tamu.edu
Anshuman GuptaVice President Data ScienceVerified email at miqdigital.com
Ratul ChowdhuryAssistant Professor, Iowa State UniversityVerified email at iastate.edu
Ali R. ZomorrodiMassachusetts General Hospital & Harvard Medical SchoolVerified email at mgh.harvard.edu
Anupam ChowdhuryPhD, Chemical Engineering, The Pennsylvania State UniversityVerified email at psu.edu
Lin WangPenn StateVerified email at PSU.EDU
Rajib SahaGraduate Chair and Richard L. & Carol S. McNeel Associate Professor, University of Nebraska-LincolnVerified email at unl.edu
Saratram GopalakrishnanDepartment of Pediatrics, University of California San DiegoVerified email at ucsd.edu
Chiam Yu NgX Development, LLCVerified email at google.com
Satyakam DashPhD, Chemical engineering, Pennsylvania State UniversityVerified email at alumni.psu.edu
Matthew GrisewoodSchrödinger, Inc.Verified email at schrodinger.com
Sridhar RanganathanPrincipal Computational Biologist, 64xBioVerified email at 64xbio.com
Ioannis (Yannis) P. AndroulakisRutgers, The State University of New JerseyVerified email at soe.rutgers.edu
John I. HendryComputational Research Scientist II, DoD Biotechnology High Performance Software Applications Inst.Verified email at bhsai.org
Charles Fosterdsm-firmenichVerified email at dsm.com
Siu Hung Joshua ChanColorado State UniversityVerified email at colostate.edu
Ali KhodayariPhD in Chemical Engineering | Penn StateVerified email at genomatica.com
Daniel OlsonAssistant Professor, Dartmouth CollegeVerified email at dartmouth.edu
Brian Frederick PflegerProfessor of Chemical Engineering, University of Wisconsin-MadisonVerified email at engr.wisc.edu

Costas D. Maranas

Donald B. Broughton Professor of Chemical Engineering, Penn State University

Verified email at psu.edu - Homepage

Reconstruction analysis and redesign of metabolic networks computational protein enzyme and antibody design synthetic biology


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Optknock: a bilevel programming framework for identifying gene knockout strategies for microbial strain optimization AP Burgard, P Pharkya, CD Maranas Biotechnology and bioengineering 84 (6), 647-657, 2003	1520	2003
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	1090	2019
Managing demand uncertainty in supply chain planning A Gupta, CD Maranas Computers & chemical engineering 27 (8-9), 1219-1227, 2003	847	2003
OptStrain: a computational framework for redesign of microbial production systems P Pharkya, AP Burgard, CD Maranas Genome research 14 (11), 2367-2376, 2004	612	2004
αBB: A global optimization method for general constrained nonconvex problems IP Androulakis, CD Maranas, CA Floudas Journal of Global Optimization 7, 337-363, 1995	586	1995
Flux coupling analysis of genome-scale metabolic network reconstructions AP Burgard, EV Nikolaev, CH Schilling, CD Maranas Genome research 14 (2), 301-312, 2004	515	2004
OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions S Ranganathan, PF Suthers, CD Maranas PLoS computational biology 6 (4), e1000744, 2010	489	2010
In silico design and adaptive evolution of Escherichia coli for production of lactic acid SS Fong, AP Burgard, CD Herring, EM Knight, FR Blattner, CD Maranas, ... Biotechnology and bioengineering 91 (5), 643-648, 2005	488	2005
Optimization based automated curation of metabolic reconstructions V Satish Kumar, MS Dasika, CD Maranas BMC bioinformatics 8, 1-16, 2007	446	2007
OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities AR Zomorrodi, CD Maranas PLoS computational biology 8 (2), e1002363, 2012	437	2012
An optimization framework for identifying reaction activation/inhibition or elimination candidates for overproduction in microbial systems P Pharkya, CD Maranas Metabolic engineering 8 (1), 1-13, 2006	395	2006
Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA P Xu, S Ranganathan, ZL Fowler, CD Maranas, MAG Koffas Metabolic engineering 13 (5), 578-587, 2011	377	2011
Synthetic biology of cyanobacteria: unique challenges and opportunities BM Berla, R Saha, CM Immethun, CD Maranas, TS Moon, HB Pakrasi Frontiers in microbiology 4, 246, 2013	349	2013
Finding all solutions of nonlinearly constrained systems of equations CD Maranas, CA Floudas Journal of Global Optimization 7, 143-182, 1995	311	1995
Global optimization in generalized geometric programming CD Maranas, CA Floudas Computers & Chemical Engineering 21 (4), 351-369, 1997	301	1997
Optimization‐based framework for inferring and testing hypothesized metabolic objective functions AP Burgard, CD Maranas Biotechnology and bioengineering 82 (6), 670-677, 2003	297	2003
Creating multiple-crossover DNA libraries independent of sequence identity S Lutz, M Ostermeier, GL Moore, CD Maranas, SJ Benkovic Proceedings of the National Academy of Sciences 98 (20), 11248-11253, 2001	274	2001
GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions VS Kumar, CD Maranas PLoS computational biology 5 (3), e1000308, 2009	273	2009
Mid-term supply chain planning under demand uncertainty: customer demand satisfaction and inventory management A Gupta, CD Maranas, CM McDonald Computers & Chemical Engineering 24 (12), 2613-2621, 2000	250	2000
Zea mays i RS1563: a comprehensive genome-scale metabolic reconstruction of maize metabolism R Saha, PF Suthers, CD Maranas PloS one 6 (7), e21784, 2011	238	2011

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