| Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis M Vignes, J Vandel, D Allouche, N Ramadan-Alban, C Cierco-Ayrolles, ... PloS one 6 (12), e29165, 2011 | 136 | 2011 |
| Computational protein design as an optimization problem D Allouche, I André, S Barbe, J Davies, S de Givry, G Katsirelos, ... Artificial Intelligence 212, 59-79, 2014 | 103 | 2014 |
| Multi-language evaluation of exact solvers in graphical model discrete optimization B Hurley, B O’sullivan, D Allouche, G Katsirelos, T Schiex, M Zytnicki, ... Constraints 21, 413-434, 2016 | 87 | 2016 |
| A new framework for computational protein design through cost function network optimization S Traoré, D Allouche, I André, S De Givry, G Katsirelos, T Schiex, S Barbe Bioinformatics 29 (17), 2129-2136, 2013 | 87 | 2013 |
| Simple Two-Body Cation−Water Interaction Potentials Derived from ab Initio Calculations. Comparison to Results Obtained with an Empirical Approach X Periole, D Allouche, JP Daudey, YH Sanejouand The Journal of Physical Chemistry B 101 (25), 5018-5025, 1997 | 73 | 1997 |
| Guaranteed discrete energy optimization on large protein design problems D Simoncini, D Allouche, S De Givry, C Delmas, S Barbe, T Schiex Journal of chemical theory and computation 11 (12), 5980-5989, 2015 | 71 | 2015 |
| Anytime hybrid best-first search with tree decomposition for weighted CSP D Allouche, S De Givry, G Katsirelos, T Schiex, M Zytnicki International Conference on Principles and Practice of Constraint …, 2015 | 69 | 2015 |
| Ca2+/Mg2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study D Allouche, J Parello, YH Sanejouand Journal of molecular biology 285 (2), 857-873, 1999 | 68 | 1999 |
| Fast search algorithms for computational protein design S Traoré, KE Roberts, D Allouche, BR Donald, I André, T Schiex, S Barbe Journal of computational chemistry 37 (12), 1048-1058, 2016 | 46 | 2016 |
| Russian doll search with tree decomposition M Sanchez, D Allouche, S De Givry, T Schiex Proc. IJCAI 9, 603-608, 2009 | 39 | 2009 |
| New effective potentials extraction method for the interaction between cations and water X Periole, D Allouche, A Ramirez-Solis, I Ortega-Blake, JP Daudey, ... The Journal of Physical Chemistry B 102 (43), 8579-8587, 1998 | 34 | 1998 |
| Toulbar2, an open source exact cost function network solver D Allouche, S de Givry, T Schiex Givry and T. Schiex," Toulbar2 an open source exact cost function network solver, 2010 | 32 | 2010 |
| Synthesis of a new cationic pyropheophorbide derivative and studies of its aggregation process in aqueous solution AS Fabiano, D Allouche, YH Sanejouand, N Paillous Photochemistry and photobiology 66 (3), 336-345, 1997 | 31 | 1997 |
| Computational protein design as a cost function network optimization problem D Allouche, S Traoré, I André, S De Givry, G Katsirelos, S Barbe, T Schiex International Conference on Principles and Practice of Constraint …, 2012 | 24 | 2012 |
| Towards parallel non serial dynamic programming for solving hard weighted csp D Allouche, S De Givry, T Schiex International Conference on Principles and Practice of Constraint …, 2010 | 22 | 2010 |
| Tractability-preserving transformations of global cost functions D Allouche, C Bessiere, P Boizumault, S De Givry, P Gutierrez, JHM Lee, ... Artificial Intelligence 238, 166-189, 2016 | 21 | 2016 |
| Filtering decomposable global cost functions D Allouche, C Bessière, P Boizumault, S De Givry, P Gutierrez, S Loudni, ... Proceedings of the AAAI Conference on Artificial Intelligence 26 (1), 407-413, 2012 | 21 | 2012 |
| Variable neighborhood search for graphical model energy minimization A Ouali, D Allouche, S de Givry, S Loudni, Y Lebbah, L Loukil, ... Artificial Intelligence 278, 103194, 2020 | 18 | 2020 |
| BioMAJ: a flexible framework for databanks synchronization and processing O Filangi, Y Beausse, A Assi, L Legrand, JM Larré, V Martin, O Collin, ... Bioinformatics 24 (16), 1823-1825, 2008 | 18 | 2008 |
| Variable neighborhood search with cost function networks to solve large computational protein design problems A Charpentier, D Mignon, S Barbe, J Cortes, T Schiex, T Simonson, ... Journal of Chemical Information and Modeling 59 (1), 127-136, 2018 | 16 | 2018 |
Simon de GivryINRAE MIAT, University of Toulouse, FranceVerified email at inrae.fr
