Jennifer Listgarten
Jennifer Listgarten
Professor, UC Berkeley EECS and Center for Computational Biology
Verified email at - Homepage
Cited by
Cited by
Optimized sgRNA design to maximize activity and minimize off-target effects of CRISPR-Cas9
JG Doench, N Fusi, M Sullender, M Hegde, EW Vaimberg, KF Donovan, ...
Nature biotechnology 34 (2), 184-191, 2016
FaST linear mixed models for genome-wide association studies
C Lippert, J Listgarten, Y Liu, CM Kadie, RI Davidson, D Heckerman
Nature methods 8 (10), 833-835, 2011
Rethinking drug design in the artificial intelligence era
P Schneider, WP Walters, AT Plowright, N Sieroka, J Listgarten, ...
Nature reviews drug discovery 19 (5), 353-364, 2020
Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry
J Listgarten, A Emili
Molecular & Cellular Proteomics 4 (4), 419-434, 2005
Improved linear mixed models for genome-wide association studies
J Listgarten, C Lippert, CM Kadie, RI Davidson, E Eskin, D Heckerman
Nature methods 9 (6), 525-526, 2012
Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs
J Listgarten, M Weinstein, BP Kleinstiver, AA Sousa, JK Joung, J Crawford, ...
Nature biomedical engineering 2 (1), 38-47, 2018
Orthologous CRISPR–Cas9 enzymes for combinatorial genetic screens
FJ Najm, C Strand, KF Donovan, M Hegde, KR Sanson, EW Vaimberg, ...
Nature biotechnology 36 (2), 179-189, 2018
Epigenome-wide association studies without the need for cell-type composition
J Zou, C Lippert, D Heckerman, M Aryee, J Listgarten
Nature methods 11 (3), 309-311, 2014
Predictive models for breast cancer susceptibility from multiple single nucleotide polymorphisms
J Listgarten, S Damaraju, B Poulin, L Cook, J Dufour, A Driga, J Mackey, ...
Clinical cancer research 10 (8), 2725-2737, 2004
Conditioning by adaptive sampling for robust design
D Brookes, H Park, J Listgarten
Proceedings of the 36th International Conference on Machine Learning 97, 773-782, 2019
Additive contribution of HLA class I alleles in the immune control of HIV-1 infection
A Leslie, PC Matthews, J Listgarten, JM Carlson, C Kadie, T Ndung'u, ...
Journal of virology 84 (19), 9879-9888, 2010
Correction for hidden confounders in the genetic analysis of gene expression
J Listgarten, C Kadie, EE Schadt, D Heckerman
Proceedings of the National Academy of Sciences 107 (38), 16465-16470, 2010
Lymphovascular invasion is associated with poor survival in gastric cancer: an application of gene-expression and tissue array techniques
BJ Dicken, K Graham, SM Hamilton, S Andrews, R Lai, J Listgarten, ...
Annals of surgery 243 (1), 64-73, 2006
Multiple alignment of continuous time series
J Listgarten, R Neal, S Roweis, A Emili
Advances in neural information processing systems 17, 2004
Learning protein fitness models from evolutionary and assay-labeled data
C Hsu, H Nisonoff, C Fannjiang, J Listgarten
Nature biotechnology 40 (7), 1114-1122, 2022
Extensive HLA class I allele promiscuity among viral CTL epitopes
N Frahm, K Yusim, TJ Suscovich, S Adams, J Sidney, P Hraber, HS Hewitt, ...
European journal of immunology 37 (9), 2419-2433, 2007
A genome-to-genome analysis of associations between human genetic variation, HIV-1 sequence diversity, and viral control
I Bartha, JM Carlson, CJ Brumme, PJ McLaren, ZL Brumme, M John, ...
elife 2, e01123, 2013
Widespread impact of HLA restriction on immune control and escape pathways of HIV-1
JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ...
Journal of virology 86 (9), 5230-5243, 2012
Gaussian process prior variational autoencoders
FP Casale, AV Dalca, L Saglietti, J Listgarten, N Fusi
Advances in Neural Information Processing Systems 31 (NeurIPS 2018), 2018
Correlates of protective cellular immunity revealed by analysis of population-level immune escape pathways in HIV-1
JM Carlson, CJ Brumme, E Martin, J Listgarten, MA Brockman, AQ Le, ...
Journal of virology 86 (24), 13202-13216, 2012
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