Ramy K. Aziz

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Victor NizetDistinguished Professor of Pediatrics and PharmacyVerified email at ucsd.edu
Rob EdwardsMatthew Flinders Fellow of Bioinformatics, Flinders University, Adelaide, SA, AustraliaVerified email at flinders.edu.au
Jason N. ColeDirector of Immunology, Cidara TherapeuticsVerified email at cidara.com
Mark WalkerThe University of QueenslandVerified email at uq.edu.au
Mariam R. RizkallahResearch associate, Scientific IT, Fraunhofer IFAMVerified email at ifam.fraunhofer.de
Jonathan MonkUC San DiegoVerified email at ucsd.edu
Marwa ElRakaibyDepartment of Microbiology and Immunology, Faculty of Pharmacy, Cairo UniversityVerified email at pharma.cu.edu.eg
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Bioinformatics, Utrecht UniversityVerified email at uni-jena.de
Martina Sanderson-SmithUniversity of WollongongVerified email at uow.edu.au
Rama SaadVanderbilt University Medical CenterVerified email at vumc.org
Pep CharusantiNNF Center for Biosustainability, Technical University of DenmarkVerified email at biosustain.dtu.dk
Aymen Samir YassinProfessor of Microbiology and Immunology, Faculty of Pharmacy, Cairo UniversityVerified email at pharma.cu.edu.eg
Samira DaheshUniversity of California San DiegoVerified email at health.ucsd.edu
Katelyn McNairResearch Associate, San Diego State UniversityVerified email at mail.sdsu.edu
Gordon D PuschFellowship for Interpretation of GenomesVerified email at xnet.com
Heba AttiaLecturer, Department of Microbiology and Immunology, Faculty of Pharmacy, Cairo UniversityVerified email at pharma.cu.edu.eg
yomna hashemBritish University in EgyptVerified email at bue.edu.eg
Mohammed Mostafa Hassan NoohBiochemistry professor, Faculty of Pharmacy Cairo UniversityVerified email at pharma.cu.edu.eg
Radwa SharafFoundation MedicineVerified email at foundationmedicine.com
Mona KashefDepartment of Microbiology and Immunology. Faculty of Pharmacy. Cairo UniversityVerified email at pharma.cu.edu.eg

Ramy K. Aziz

Prof., Microbiology & Immunology, Faculty of Pharmacy, Cairo University/ Head, MARC Biolabs, Egypt

Verified email at pharma.cu.edu.eg - Homepage

Microbiology and Immunology Microbiome Genomics Bioinformatics Phage


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The RAST Server: rapid annotations using subsystems technology RK Aziz, D Bartels, A Best, M DeJongh, T Disz, R Edwards, K Formsma, ... BMC genomics 9 (1), 75, 2008	12408	2008
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ... Nucleic acids research 48 (D1), D606-D612, 2020	941	2020
DNase expression allows the pathogen group A Streptococcus to escape killing in neutrophil extracellular traps JT Buchanan, AJ Simpson, RK Aziz, GY Liu, SA Kristian, M Kotb, ... Current biology 16 (4), 396-400, 2006	901	2006
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes BE Dutilh, N Cassman, K McNair, SE Sanchez, GGZ Silva, L Boling, ... Nature communications 5, 4498, 2014	853	2014
Minimum information about an uncultivated virus genome (MIUVIG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29, 2019	552	2019
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies S Akhter, RK Aziz, RA Edwards Nucleic acids research 40 (16), e126-e126, 2012	492	2012
DNase Sda1 provides selection pressure for a switch to invasive group A streptococcal infection MJ Walker, A Hollands, ML Sanderson-Smith, JN Cole, JK Kirk, ... Nature medicine 13 (8), 981-985, 2007	473	2007
Transposases are the most abundant, most ubiquitous genes in nature RK Aziz, M Breitbart, RA Edwards Nucleic acids research 38 (13), 4207-4217, 2010	376	2010
Genome-scale metabolic reconstructions of multiple Escherichia coli strains highlight strain-specific adaptations to nutritional environments JM Monk, P Charusanti, RK Aziz, JA Lerman, N Premyodhin, JD Orth, ... Proceedings of the National Academy of Sciences 110 (50), 20338-20343, 2013	340	2013
Helicobacter pylori: a poor man's gut pathogen? MM Khalifa, RR Sharaf, RK Aziz Gut pathogens 2 (1), 2, 2010	330	2010
Comparative genome-scale modelling of Staphylococcus aureus strains identifies strain-specific metabolic capabilities linked to pathogenicity E Bosi, JM Monk, RK Aziz, M Fondi, V Nizet, BØ Palsson Proceedings of the National Academy of Sciences 113 (26), E3801-E3809, 2016	268	2016
Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee D Turner, AN Shkoporov, C Lood, AD Millard, BE Dutilh, P Alfenas-Zerbini, ... Archives of Virology 168 (2), 74, 2023	267	2023
Rise and Persistence of Global M1T1 Clone of Streptococcus pyogenes RK Aziz, M Kotb Emerging infectious diseases 14 (10), 1511-1517, 2008	241	2008
Invasive M1T1 group A Streptococcus undergoes a phase‐shift in vivo to prevent proteolytic degradation of multiple virulence factors by SpeB RK Aziz, MJ Pabst, A Jeng, R Kansal, D Low, V Nizet, M Kotb Molecular microbiology 51 (1), 123-134, 2004	239	2004
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage R Edwards, A Vega, H Norman, MC Ohaeri, K Levi, E Dinsdale, O Cinek, ... Nature Microbiology 4, 1727–1736, 2019	236	2019
SEED servers: high-performance access to the SEED genomes, annotations, and metabolic models RK Aziz, S Devoid, T Disz, RA Edwards, CS Henry, GJ Olsen, R Olson, ... PloS one 7 (10), e48053, 2012	230	2012
Contaminated water as a source of Helicobacter pylori infection RK Aziz, MM Khalifa, RR Sharaf Journal of Advanced Research, 2015	201	2015
Taxonomy of prokaryotic viruses: 2018-2019 update from the ICTV Bacterial and Archaeal Viruses Subcommittee EM Adriaenssens, MB Sullivan, P Knezevic, LJ van Zyl, BL Sarkar, ... Archives of Virology, 1-8, 2020	196	2020
Gut Pharmacomicrobiomics: the tip of an iceberg of complex interactions between drugs and gut-associated microbes R Saad, MR Rizkallah, RK Aziz Gut Pathogens 4 (1), 16, 2012	178	2012
Pharmacomicrobiomics: The impact of human microbiome variations on systems pharmacology and personalized therapeutics M ElRakaiby, BE Dutilh, MR Rizkallah, A Boleij, JN Cole, RK Aziz OMICS: A Journal of Integrative Biology, 2014	172	2014

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