Josh D. Neufeld

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Michael DJ LynchMetagenom Bio Life Science and Department of Biology, University of WaterlooVerified email at uwaterloo.ca
Katja EngelUniversity of WaterlooVerified email at uwaterloo.ca
Murrell JCUniversity of East Anglia,Verified email at uea.ac.uk
Michael HallDalhousie UniversityVerified email at dal.ca
Andrea K BartramUniversity of WaterlooVerified email at uwaterloo.ca
Marc G DumontSchool of Biological Sciences, University of Southampton UKVerified email at soton.ac.uk
Andrew DoxeyAssociate Professor, University of WaterlooVerified email at uwaterloo.ca
Trevor CharlesUniversity of Waterloo, Waterloo Centre for Microbial Research, Metagenom BioVerified email at uwaterloo.ca
Sherry SchiffProfessor, Earth & Environmental Sciences, University of WaterlooVerified email at uwaterloo.ca
William W. MohnProfessor, University of British ColumbiaVerified email at mail.ubc.ca
Andre MasellaResearch Associate, University of WaterlooVerified email at uwaterloo.ca
Gabriel Moreno-HagelsiebWilfrid Laurier UniversityVerified email at wlu.ca
Ashley A. Stegelmeier (née Ross)Director of Product Development, CeragenVerified email at uoguelph.ca
V.K. WalkerQueen's UniversityVerified email at queensu.ca
Jennifer StearnsMcMaster UniversityVerified email at mcmaster.ca
Jackson M. TsujiYoung Research Fellow, Japan Agency for Marine-Earth Science and TechnologyVerified email at jamstec.go.jp
Yin ChenUniversity of BirminghamVerified email at bham.ac.uk
Michael WagnerProfessor for Microbial Ecology, University of ViennaVerified email at microbial-ecology.net
Dilani B. SenadheeraAssistant Professor, University of TorontoVerified email at utoronto.ca
Howard C TenenbaumUniversity of Toronto, Faculty of DentistryVerified email at dentistry.utoronto.ca

Josh D. Neufeld

Department of Biology, University of Waterloo

Verified email at uwaterloo.ca - Homepage

Microbiology microbial ecology human microbiome


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A communal catalogue reveals Earth’s multiscale microbial diversity LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ... Nature 551 (7681), 457-463, 2017	2445	2017
PANDAseq: paired-end assembler for Illumina sequences AP Masella, AK Bartram, JM Truszkowski, DG Brown, JD Neufeld BMC Bioinformatics 13 (1), 31, 2012	2283	2012
Ecology and exploration of the rare biosphere MDJ Lynch, JD Neufeld Nature Reviews Microbiology 13 (4), 217-229, 2015	1112	2015
Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology 77 (11), 3846-3852, 2011	998	2011
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications P Yilmaz, R Kottmann, D Field, R Knight, JR Cole, L Amaral-Zettler, ... Nature Biotechnology 29 (5), 415-420, 2011	755	2011
DNA stable-isotope probing JD Neufeld, J Vohra, MG Dumont, T Lueders, M Manefield, MW Friedrich, ... Nature Protocols 2 (4), 860-866, 2007	550	2007
Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ... Science Translational Medicine 9 (379), eaaf6397, 2017	546	2017
Bacterial biogeography of the human digestive tract JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ... Scientific Reports 1, 170, 2011	477	2011
Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld Applied and Environmental Microbiology, 2014	286	2014
Who eats what, where and when? Isotope-labelling experiments are coming of age JD Neufeld, M Wagner, JC Murrell The ISME Journal 1 (2), 103-110, 2007	286	2007
Methodological considerations for the use of stable isotope probing in microbial ecology JD Neufeld, MG Dumont, J Vohra, JC Murrell Microbial Ecology 53 (3), 435-442, 2007	278	2007
Something from (almost) nothing: the impact of multiple displacement amplification on microbial ecology EK Binga, RS Lasken, JD Neufeld The ISME Journal 2 (3), 233-241, 2008	236	2008
Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia AA Ross, KM Müller, JS Weese, JD Neufeld Proceedings of the National Academy of Sciences 115 (25), E5786-E5795, 2018	230	2018
Biogeography of anaerobic ammonia-oxidizing (anammox) bacteria P Sonthiphand, MW Hall, JD Neufeld Frontiers in Microbiology 5, 399, 2014	210	2014
Denaturing gradient gel electrophoresis (DGGE) for microbial community analysis SJ Green, MB Leigh, JD Neufeld Hydrocarbon and Lipid Microbiology Protocols: Microbial Quantitation …, 2017	207	2017
Stable-isotope probing implicates Methylophaga spp and novel Gammaproteobacteria in marine methanol and methylamine metabolism JD Neufeld, H Schäfer, MJ Cox, R Boden, IR McDonald, JC Murrell The ISME Journal 1 (6), 480-491, 2007	207	2007
Cultivation and characterization of Candidatus Nitrosocosmicus exaquare, an ammonia-oxidizing archaeon from a municipal wastewater treatment system LA Sauder, M Albertsen, K Engel, J Schwarz, PH Nielsen, M Wagner, ... The ISME Journal 11 (5), 1142, 2017	205	2017
The skin microbiome of vertebrates AA Ross, A Rodrigues Hoffmann, JD Neufeld Microbiome 7 (1), 79, 2019	200	2019
Inter-personal diversity and temporal dynamics of dental, tongue, and salivary microbiota in the healthy oral cavity MW Hall, N Singh, KF Ng, DK Lam, MB Goldberg, HC Tenenbaum, ... NPJ Biofilms and Microbiomes 3 (1), 2, 2017	200	2017
Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm AK Bartram, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff, ... FEMS Microbiology Ecology 87 (2), 403-415, 2014	197	2014

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