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Jorge Duitama
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Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity
F Duan, J Duitama, S Al Seesi, CM Ayres, SA Corcelli, AP Pawashe, ...
The Journal of experimental medicine 211 (11), 2231-2248, 2014
4352014
Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques
J Duitama, GK McEwen, T Huebsch, S Palczewski, S Schulz, ...
Nucleic acids research 40 (5), 2041-2053, 2012
1532012
An integrated framework for discovery and genotyping of genomic variants from high-throughput sequencing experiments
J Duitama, JC Quintero, DF Cruz, C Quintero, G Hubmann, ...
Nucleic acids research 42 (6), e44-e44, 2014
1352014
Structural variants in 3000 rice genomes
RR Fuentes, D Chebotarov, J Duitama, S Smith, JF De la Hoz, ...
Genome research 29 (5), 870-880, 2019
1292019
A comprehensively molecular haplotype-resolved genome of a European individual
EK Suk, GK McEwen, J Duitama, K Nowick, S Schulz, S Palczewski, ...
Genome research 21 (10), 1672-1685, 2011
1102011
Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast
TM Pais, MR Foulquié-Moreno, G Hubmann, J Duitama, S Swinnen, ...
PLoS genetics 9 (6), e1003548, 2013
1062013
ReFHap: a reliable and fast algorithm for single individual haplotyping
J Duitama, T Huebsch, G McEwen, EK Suk, MR Hoehe
Proceedings of the First ACM International Conference on Bioinformatics and …, 2010
822010
Resequencing of common bean identifies regions of inter–gene pool introgression and provides comprehensive resources for molecular breeding
JD Lobaton, T Miller, J Gil, D Ariza, JF de la Hoz, A Soler, S Beebe, ...
The plant genome 11 (2), 170068, 2018
812018
Whole Genome Sequencing of Elite Rice Cultivars as a Comprehensive Information Resource for Marker Assisted Selection
J Duitama, A Silva, Y Sanabria, DF Cruz, C Quintero, C Ballen, M Lorieux, ...
PLoS One 10 (4), e0124617, 2015
802015
Large-scale analysis of tandem repeat variability in the human genome
J Duitama, A Zablotskaya, R Gemayel, A Jansen, S Belet, JR Vermeesch, ...
Nucleic acids research 42 (9), 5728-5741, 2014
792014
Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping
MC Rebolledo, M Dingkuhn, B Courtois, Y Gibon, A Clément-Vidal, ...
Journal of experimental botany 66 (18), 5555-5566, 2015
732015
Bioinformatic analysis of genotype by sequencing (GBS) data with NGSEP
C Perea, JF De La Hoz, DF Cruz, JD Lobaton, P Izquierdo, JC Quintero, ...
BMC Genomics 17 (5), 498, 2016
722016
NGSEP3: accurate variant calling across species and sequencing protocols
D Tello, J Gil, CD Loaiza, JJ Riascos, N Cardozo, J Duitama
Bioinformatics 35 (22), 4716-4723, 2019
642019
Combining image analysis, genome wide association studies and different field trials to reveal stable genetic regions related to panicle architecture and the number of …
MC Rebolledo, AL Peña, J Duitama, DF Cruz, M Dingkuhn, C Grenier, ...
Frontiers in plant science 7, 207616, 2016
642016
Identification of cassava microRNAs under abiotic stress
C Ballén-Taborda, G Plata, S Ayling, F Rodríguez-Zapata, ...
International journal of genomics 2013, 2013
612013
Towards accurate detection and genotyping of expressed variants from whole transcriptome sequencing data
J Duitama, PK Srivastava, II Măndoiu
BMC genomics 13 (Suppl 2), S6, 2012
612012
Identification of multiple interacting alleles conferring low glycerol and high ethanol yield in Saccharomyces cerevisiae ethanolic fermentation
G Hubmann, L Mathé, MR Foulquié-Moreno, J Duitama, E Nevoigt, ...
Biotechnol Biofuels 6, 87, 2013
562013
Quantitative trait analysis of yeast biodiversity yields novel gene tools for metabolic engineering
G Hubmann, MR Foulquié-Moreno, E Nevoigt, J Duitama, N Meurens, ...
Metabolic engineering 17, 68-81, 2013
542013
Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
T Garcia, J Duitama, SS Zullo, J Gil, A Ariani, S Dohle, A Palkovic, ...
Nature communications 12 (1), 702, 2021
532021
Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast
J Duitama, A Sánchez-Rodríguez, A Goovaerts, S Pulido-Tamayo, ...
BMC genomics 15 (1), 207, 2014
522014
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