Medhat Mahmoud
Medhat Mahmoud
PostDoc fellow, Baylor college of medicine, Human genome sequencing center
Verified email at
Cited by
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Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
Structural variant calling: the long and the short of it
M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ...
Genome biology 20, 1-14, 2019
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
Performance assessment of DNA sequencing platforms in the ABRF Next-Generation Sequencing Study
J Foox, SW Tighe, CM Nicolet, JM Zook, M Byrska-Bishop, WE Clarke, ...
Nature biotechnology 39 (9), 1129-1140, 2021
Comprehensive structural variant detection: from mosaic to population-level
M Smolka, LF Paulin, CM Grochowski, DW Horner, M Mahmoud, ...
BioRxiv, 2022.04. 04.487055, 2022
Parliament2: Accurate structural variant calling at scale
S Zarate, A Carroll, M Mahmoud, O Krasheninina, G Jun, WJ Salerno, ...
GigaScience 9 (12), giaa145, 2020
Efficiency of PacBio long read correction by 2nd generation Illumina sequencing
M Mahmoud, M Zywicki, T Twardowski, WM Karlowski
Genomics 111 (1), 43-49, 2019
SARS-CoV-2 genomic diversity and the implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
Genome research 31 (4), 635-644, 2021
Beyond the exome: what’s next in diagnostic testing for Mendelian conditions
MH Wojcik, CM Reuter, S Marwaha, M Mahmoud, MH Duyzend, ...
The American Journal of Human Genetics 110 (8), 1229-1248, 2023
Detection of mosaic and population-level structural variants with Sniffles2
M Smolka, LF Paulin, CM Grochowski, DW Horner, M Mahmoud, ...
Nature biotechnology, 1-10, 2024
PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation
M Mahmoud, H Doddapaneni, W Timp, FJ Sedlazeck
Genome biology 22, 1-17, 2021
Intratumoral heterogeneity and clonal evolution induced by HPV integration
K Akagi, DE Symer, M Mahmoud, B Jiang, S Goodwin, D Wangsa, Z Li, ...
Cancer discovery 13 (4), 910-927, 2023
Hidden genomic diversity of SARS-CoV-2: implications for qRT-PCR diagnostics and transmission
N Sapoval, M Mahmoud, MD Jochum, Y Liu, RAL Elworth, Q Wang, ...
BioRxiv, 2020
Utility of long-read sequencing for All of Us
M Mahmoud, Y Huang, K Garimella, PA Audano, W Wan, N Prasad, ...
Nature communications 15 (1), 837, 2024
Rescuing low frequency variants within intra-host viral populations directly from Oxford Nanopore sequencing data
Y Liu, J Kearney, M Mahmoud, B Kille, FJ Sedlazeck, TJ Treangen
Nature communications 13 (1), 1321, 2022
Molecular variation of Potato virus Y isolated from Egypt
EA El-Absawy, A Mahmoud, AA Hemeida, M Helmy
International Journal of Virology 8 (1), 81-89, 2012
Approaches to whole mitochondrial genome sequencing on the Oxford Nanopore MinION
RR Zascavage, CL Hall, K Thorson, M Mahmoud, FJ Sedlazeck, JV Planz
Current Protocols in Human Genetics 104 (1), e94, 2019
Vulcan: Improved long-read mapping and structural variant calling via dual-mode alignment
Y Fu, M Mahmoud, VV Muraliraman, FJ Sedlazeck, TJ Treangen
GigaScience 10 (9), giab063, 2021
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