Amy X. Lu
Amy X. Lu
PhD Student, UC Berkeley
Verified email at - Homepage
Cited by
Cited by
Hurtful words: quantifying biases in clinical contextual word embeddings
H Zhang, AX Lu, M Abdalla, M McDermott, M Ghassemi
Proceedings of the ACM Conference on Health, Inference, and Learning, 110-120, 2020
Self-supervised contrastive learning of protein representations by mutual information maximization
AX Lu, H Zhang, M Ghassemi, A Moses
BioRxiv, 2020.09. 04.283929, 2020
Learned embeddings from deep learning to visualize and predict protein sets
C Dallago, K Schütze, M Heinzinger, T Olenyi, M Littmann, AX Lu, ...
Current Protocols 1 (5), e113, 2021
Discovering molecular features of intrinsically disordered regions by using evolution for contrastive learning
AX Lu, AX Lu, I Pritišanac, T Zarin, JD Forman-Kay, AM Moses
PLOS Computational Biology 18 (6), e1010238, 2022
The Cells Out of Sample (COOS) dataset and benchmarks for measuring out-of-sample generalization of image classifiers
A Lu, A Lu, W Schormann, M Ghassemi, D Andrews, A Moses
Advances in Neural Information Processing Systems, 1854-1862, 2019
History and publication trends in the diffusion and early uptake of indirect comparison meta-analytic methods to study drugs: animated coauthorship networks over time
JK Ban, M Tadrous, AX Lu, EA Cicinelli, SM Cadarette
BMJ open 8 (6), e019110, 2018
Evolution Is All You Need: Phylogenetic Augmentation for Contrastive Learning
AX Lu, AX Lu, A Moses
arXiv preprint arXiv:2012.13475, 2020
Data-Driven Optimization for Protein Design: Workflows, Algorithms and Metrics
S Kolli, AX Lu, X Geng, A Kumar, S Levine
ICLR2022 Machine Learning for Drug Discovery, 2022
Pretraining strategies for effective promoter-driven gene expression prediction
AJ Reddy, MH Herschl, S Kolli, AX Lu, X Geng, A Kumar, PD Hsu, ...
bioRxiv, 2023.02. 24.529941, 2023
TOPH (True Retrieval Of Proteins Homologs): Adapting A Contrastive Question-Answering Framework for Protein Search
R Boger, A Lu, S Chithrananda, K Yang, P Skopintsev, B Adler, E Wallace, ...
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