| In silico binary classification QSAR models based on 4D-fingerprints and MOE descriptors for prediction of hERG blockage BH Su, M Shen, EX Esposito, AJ Hopfinger, YJ Tseng Journal of chemical information and modeling 50 (7), 1304-1318, 2010 | 78 | 2010 |
| Comparative studies of AlphaFold, RoseTTAFold and Modeller: a case study involving the use of G-protein-coupled receptors C Lee, BH Su, YJ Tseng Briefings in Bioinformatics 23 (5), bbac308, 2022 | 54 | 2022 |
| Dependence of QSAR models on the selection of trial descriptor sets: a demonstration using nanotoxicity endpoints of decorated nanotubes CY Shao, SZ Chen, BH Su, YJ Tseng, EX Esposito, AJ Hopfinger Journal of chemical information and modeling 53 (1), 142-158, 2013 | 48 | 2013 |
| A comprehensive support vector machine binary hERG classification model based on extensive but biased end point hERG data sets M Shen, BH Su, EX Esposito, AJ Hopfinger, YJ Tseng Chemical research in toxicology 24 (6), 934-949, 2011 | 46 | 2011 |
| Human breathomics database TC Kuo, CE Tan, SY Wang, OA Lin, BH Su, MT Hsu, J Lin, YY Cheng, ... Database 2020, baz139, 2020 | 44 | 2020 |
| Rule-based prediction models of cytochrome P450 inhibition BH Su, Y Tu, C Lin, CY Shao, OA Lin, YJ Tseng Journal of Chemical Information and Modeling 55 (7), 1426-1434, 2015 | 43 | 2015 |
| Mutagenicity in a molecule: identification of core structural features of mutagenicity using a scaffold analysis KH Hsu, BH Su, YS Tu, OA Lin, YJ Tseng PloS one 11 (2), e0148900, 2016 | 38 | 2016 |
| CypRules: a rule-based P450 inhibition prediction server CY Shao, BH Su, YS Tu, C Lin, OA Lin, YJ Tseng Bioinformatics 31 (11), 1869-1871, 2015 | 35 | 2015 |
| Ensemble modeling with machine learning and deep learning to provide interpretable generalized rules for classifying CNS drugs with high prediction power TH Yu, BH Su, LC Battalora, S Liu, YJ Tseng Briefings in bioinformatics 23 (1), bbab377, 2022 | 27 | 2022 |
| Predictive Toxicology Modeling: Protocols for Exploring hERG Classification and Tetrahymena pyriformis End Point Predictions BH Su, Y Tu, EX Esposito, YJ Tseng Journal of chemical information and modeling 52 (6), 1660-1673, 2012 | 25 | 2012 |
| Synthesis and inhibitory effects of novel pyrimido-pyrrolo-quinoxalinedione analogues targeting nucleoproteins of influenza A virus H1N1 MI Lin, BH Su, CH Lee, ST Wang, WC Wu, P Dangate, SY Wang, ... European journal of medicinal chemistry 102, 477-486, 2015 | 24 | 2015 |
| R E MUS: a tool for identification of unique peptide segments as epitopes TW Pai, MDT Chang, WS Tzou, BH Su, PC Wu, HT Chang, WI Chou Nucleic Acids Research 34 (suppl_2), W198-W201, 2006 | 20 | 2006 |
| Current development of integrated web servers for preclinical safety and pharmacokinetics assessments in drug development Y Hsiao, BH Su, YJ Tseng Briefings in Bioinformatics 22 (3), bbaa160, 2021 | 16 | 2021 |
| A reinforced merging methodology for mapping unique peptide motifs in members of protein families HT Chang, TW Pai, T Fan, BH Su, PC Wu, CY Tang, CT Chang, SH Liu, ... BMC bioinformatics 7, 1-16, 2006 | 16 | 2006 |
| Rule-based classification models of molecular autofluorescence BH Su, YS Tu, OA Lin, YC Harn, MY Shen, YJ Tseng Journal of Chemical Information and Modeling 55 (2), 434-445, 2015 | 15 | 2015 |
| Advances in the prediction of mouse liver microsomal studies: from machine learning to deep learning A Renn, BH Su, H Liu, J Sun, YJ Tseng Wiley Interdisciplinary Reviews: Computational Molecular Science 11 (1), e1479, 2021 | 11 | 2021 |
| Exploring possible mechanisms of action for the nanotoxicity and protein binding of decorated nanotubes: interpretation of physicochemical properties from optimal QSAR models EX Esposito, AJ Hopfinger, CY Shao, BH Su, SZ Chen, YJ Tseng Toxicology and Applied Pharmacology 288 (1), 52-62, 2015 | 11 | 2015 |
| NP-StructurePredictor: prediction of unknown natural products in plant mixtures YC Harn, BH Su, YL Ku, OA Lin, CF Chou, YJ Tseng Journal of chemical information and modeling 57 (12), 3138-3148, 2017 | 6 | 2017 |
| Template-Based de Novo Design for Type II Kinase Inhibitors and Its Extended Application to Acetylcholinesterase Inhibitors BH Su, YS Huang, CY Chang, YS Tu, YJ Tseng Molecules 18 (11), 13487-13509, 2013 | 4 | 2013 |
| Unique peptide identification of RNaseA superfamily sequences based on reinforced merging algorithms TW Pai, BH Su, PC Wu, MDT Chang, HT Chang, TC Fan, SH Liu Journal of bioinformatics and computational biology 4 (01), 75-92, 2006 | 3 | 2006 |
