Dominique Schneider

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Richard LenskiMicrobiology / EEB / Michigan State UniversityVerified email at msu.edu
Jeffrey E. BarrickDepartment of Molecular Biosciences, The University of Texas at AustinVerified email at cm.utexas.edu
Olivier TenaillonInstitut Cochin, Université Paris Cité, Inserm, CNRS , Professor Ecole PolytechniqueVerified email at inserm.fr
Claudine MEDIGUECEA/IG/Genoscope & CNRS UMR8030Verified email at genoscope.cns.fr
Stéphane CruveillerChercheur CEAVerified email at genoscope.cns.fr
Michel PageINRIA Grenoble, FranceVerified email at iae-grenoble.fr
Aurélien DommergueUniv Grenoble AlpesVerified email at univ-grenoble-alpes.fr
Sébastien WielgossSenior Scientist, ETH Zürich, Institute of Integrative Biology, Lab for Evolutionary BiologyVerified email at env.ethz.ch
Tim F CooperSchool of Biological Sciences, University of AucklandVerified email at auckland.ac.nz
Gregory BattINRIA and Institut PasteurVerified email at inria.fr
Jessica PlucainUniversity of ZurichVerified email at irem.uzh.ch
Le Gac MickaelResearcher, Ifremer Brest, FranceVerified email at ifremer.fr
Guillaume Beslonprofessor at insa-lyonVerified email at insa-lyon.fr
Carole KnibbeProfessor in Computational Biology, INSA Lyon, FranceVerified email at insa-lyon.fr
Sung Ho YoonDepartment of Systems Biotechnology, Konkuk UniversityVerified email at konkuk.ac.kr
Jihyun F. KimDepartment of Systems Biology, College of Life Science and Biotechnology, Yonsei UniversityVerified email at yonsei.ac.kr
MarusczakGeosciences Environnement ToulouseVerified email at get.obs-mip.fr
Daniel RozenLeiden UniversityVerified email at biology.leidenuniv.nl
Tom FerenciRetired from SOLES, University of SydneyVerified email at sydney.edu.au
Robert WoodsUniversity of Michigan and Veterans Affairs Ann Arbor Healthcare SystemVerified email at umich.edu

Dominique Schneider

Professor in Molecular Evolution, University Joseph Fourier Grenoble

Verified email at univ-grenoble-alpes.fr

Experimental evolution evolutionary trajectories epistasis adaptive diversification genomics and regulatory networks


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Genome evolution and adaptation in a long-term experiment with Escherichia coli JE Barrick, DS Yu, SH Yoon, H Jeong, TK Oh, D Schneider, RE Lenski, ... Nature 461 (7268), 1243-1247, 2009	1429	2009
Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths M Touchon, C Hoede, O Tenaillon, V Barbe, S Baeriswyl, P Bidet, ... PLoS Genet 5 (1), e1000344, 2009	1364	2009
Negative epistasis between beneficial mutations in an evolving bacterial population AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper Science 332 (6034), 1193-1196, 2011	641	2011
Tempo and mode of genome evolution in a 50,000-generation experiment O Tenaillon, JE Barrick, N Ribeck, DE Deatherage, JL Blanchard, ... bioRxiv, 036806, 2016	497	2016
Improvement of pCVD442, a suicide plasmid for gene allele exchange in bacteria N Philippe, JP Alcaraz, E Coursange, J Geiselmann, D Schneider Plasmid 51 (3), 246-255, 2004	461	2004
Tests of parallel molecular evolution in a long-term experiment with Escherichia coli R Woods, D Schneider, CL Winkworth, MA Riley, RE Lenski Proceedings of the National Academy of Sciences 103 (24), 9107-9112, 2006	386	2006
Genomic evolution during a 10,000-generation experiment with bacteria D Papadopoulos, D Schneider, J Meier-Eiss, W Arber, RE Lenski, M Blot Proceedings of the National Academy of Sciences 96 (7), 3807-3812, 1999	356	1999
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B VS Cooper, D Schneider, M Blot, RE Lenski Journal of Bacteriology 183 (9), 2834-2841, 2001	352	2001
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load S Wielgoss, JE Barrick, O Tenaillon, MJ Wiser, WJ Dittmar, S Cruveiller, ... Proceedings of the National Academy of Sciences 110 (1), 222-227, 2013	308	2013
Validation of qualitative models of genetic regulatory networks by model checking: analysis of the nutritional stress response in Escherichia coli G Batt, D Ropers, H De Jong, J Geiselmann, R Mateescu, M Page, ... Bioinformatics 21 (suppl 1), i19-i28, 2005	245	2005
Mutation rate inferred from synonymous substitutions in a long-term evolution experiment with Escherichia coli S Wielgoss, JE Barrick, O Tenaillon, S Cruveiller, B Chane-Woon-Ming, ... G3: Genes, Genomes, Genetics 1 (3), 183-186, 2011	212	2011
New insights into bacterial adaptation through in vivo and in silico experimental evolution T Hindré, C Knibbe, G Beslon, D Schneider Nature Reviews Microbiology 10 (5), 352-365, 2012	204	2012
Dynamics of insertion sequence elements during experimental evolution of bacteria D Schneider, RE Lenski Research in microbiology 155 (5), 319-327, 2004	204	2004
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements D Schneider, E Duperchy, E Coursange, RE Lenski, M Blot Genetics 156 (2), 477-488, 2000	185	2000
Qualitative simulation of the carbon starvation response in Escherichia coli D Ropers, H De Jong, M Page, D Schneider, J Geiselmann Biosystems 84 (2), 124-152, 2006	181	2006
Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection E Crozat, N Philippe, RE Lenski, J Geiselmann, D Schneider Genetics 169 (2), 523-532, 2005	176	2005
Antibiotics and UV radiation induce competence for natural transformation in Legionella pneumophila X Charpentier, E Kay, D Schneider, HA Shuman Journal of bacteriology 193 (5), 1114-1121, 2011	173	2011
Evolution of global regulatory networks during a long‐term experiment with Escherichia coli N Philippe, E Crozat, RE Lenski, D Schneider Bioessays 29 (9), 846-860, 2007	171	2007
Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli C Raeside, J Gaffé, DE Deatherage, O Tenaillon, AM Briska, RN Ptashkin, ... MBio 5 (5), e01377-14, 2014	156	2014
Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli J Plucain, T Hindré, M Le Gac, O Tenaillon, S Cruveiller, C Médigue, ... Science 343 (6177), 1366-1369, 2014	145	2014

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