Unraveling the functional dark matter through global metagenomics GA Pavlopoulos, FA Baltoumas, S Liu, O Selvitopi, AP Camargo, ... Nature 622 (7983), 594-602, 2023 | 46 | 2023 |

Temporal workload-aware replicated partitioning for social networks A Turk, RO Selvitopi, H Ferhatosmanoglu, C Aykanat IEEE Transactions on Knowledge and Data Engineering 26 (11), 2832-2845, 2014 | 44 | 2014 |

Adept: a domain independent sequence alignment strategy for gpu architectures MG Awan, J Deslippe, A Buluc, O Selvitopi, S Hofmeyr, L Oliker, K Yelick BMC bioinformatics 21, 1-29, 2020 | 40 | 2020 |

Improving performance of sparse matrix dense matrix multiplication on large-scale parallel systems S Acer, O Selvitopi, C Aykanat Parallel Computing 59, 71-96, 2016 | 40 | 2016 |

Partitioning models for scaling parallel sparse matrix-matrix multiplication K Akbudak, O Selvitopi, C Aykanat ACM Transactions on Parallel Computing (TOPC) 4 (3), 1-34, 2018 | 35 | 2018 |

Locality-aware and load-balanced static task scheduling for MapReduce O Selvitopi, GV Demirci, A Turk, C Aykanat Future generation computer systems 90, 49-61, 2019 | 30 | 2019 |

Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems A Azad, O Selvitopi, MT Hussain, JR Gilbert, A Buluç IEEE Transactions on Parallel and Distributed Systems 33 (4), 989-1001, 2021 | 29 | 2021 |

Distributed many-to-many protein sequence alignment using sparse matrices O Selvitopi, S Ekanayake, G Guidi, GA Pavlopoulos, A Azad, A Buluç SC20: International Conference for High Performance Computing, Networking …, 2020 | 27 | 2020 |

A novel method for scaling iterative solvers: Avoiding latency overhead of parallel sparse-matrix vector multiplies RO Selvitopi, MM Ozdal, C Aykanat IEEE Transactions on parallel and distributed systems 26 (3), 632-645, 2014 | 24 | 2014 |

Fast shared-memory streaming multilevel graph partitioning N Jafari, O Selvitopi, C Aykanat Journal of Parallel and Distributed Computing 147, 140-151, 2021 | 23 | 2021 |

Optimizing high performance Markov clustering for pre-exascale architectures O Selvitopi, MT Hussain, A Azad, A Buluç 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020 | 22 | 2020 |

Replicated partitioning for undirected hypergraphs RO Selvitopi, A Turk, C Aykanat Journal of Parallel and Distributed Computing 72 (4), 547-563, 2012 | 22 | 2012 |

The parallelism motifs of genomic data analysis K Yelick, A Buluç, M Awan, A Azad, B Brock, R Egan, S Ekanayake, ... Philosophical Transactions of the Royal Society A 378 (2166), 20190394, 2020 | 21 | 2020 |

Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication O Selvitopi, B Brock, I Nisa, A Tripathy, K Yelick, A Buluç Proceedings of the ACM International Conference on Supercomputing, 431-442, 2021 | 16 | 2021 |

A high-throughput solver for marginalized graph kernels on GPU YH Tang, O Selvitopi, DT Popovici, A Buluç 2020 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2020 | 15 | 2020 |

A recursive hypergraph bipartitioning framework for reducing bandwidth and latency costs simultaneously O Selvitopi, S Acer, C Aykanat IEEE Transactions on Parallel and Distributed Systems 28 (2), 345-358, 2016 | 15 | 2016 |

Parallel string graph construction and transitive reduction for de novo genome assembly G Guidi, O Selvitopi, M Ellis, L Oliker, K Yelick, A Buluç 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2021 | 14 | 2021 |

Communication-avoiding and memory-constrained sparse matrix-matrix multiplication at extreme scale MT Hussain, O Selvitopi, A Buluç, A Azad 2021 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2021 | 14 | 2021 |

Reducing latency cost in 2D sparse matrix partitioning models O Selvitopi, C Aykanat Parallel Computing 57, 1-24, 2016 | 13 | 2016 |

Considerations for a distributed GraphBLAS API B Brock, A Buluç, TG Mattson, S McMillan, JE Moreira, R Pearce, ... 2020 IEEE International Parallel and Distributed Processing Symposium …, 2020 | 11 | 2020 |