| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature Communications 10, 2674, 2019 | 273 | 2019 |
| HitPredict version 4: comprehensive reliability scoring of physical protein–protein interactions from more than 100 species Y López, K Nakai, A Patil Database 2015, bav117, 2015 | 115 | 2015 |
| PSSM-Suc: Accurately predicting succinylation using position specific scoring matrix into bigram for feature extraction A Dehzangi, Y López, SP Lal, G Taherzadeh, J Michaelson, A Sattar, ... Journal of theoretical biology 425, 97-102, 2017 | 82 | 2017 |
| Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites S Firouzi, Y López, Y Suzuki, K Nakai, S Sugano, T Yamochi, T Watanabe Genome Medicine 6, 1-15, 2014 | 70 | 2014 |
| SucStruct: prediction of succinylated lysine residues by using structural properties of amino acids Y López, A Dehzangi, SP Lal, G Taherzadeh, J Michaelson, A Sattar, ... Analytical biochemistry 527, 24-32, 2017 | 63 | 2017 |
| Improving succinylation prediction accuracy by incorporating the secondary structure via helix, strand and coil, and evolutionary information from profile bigrams A Dehzangi, Y López, SP Lal, G Taherzadeh, A Sattar, T Tsunoda, ... PloS one 13 (2), e0191900, 2018 | 59 | 2018 |
| Success: evolutionary and structural properties of amino acids prove effective for succinylation site prediction Y López, A Sharma, A Dehzangi, SP Lal, G Taherzadeh, A Sattar, ... BMC genomics 19, 105-114, 2018 | 58 | 2018 |
| Divisive hierarchical maximum likelihood clustering A Sharma, Y López, T Tsunoda BMC bioinformatics 18, 139-147, 2017 | 39 | 2017 |
| HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues A Sharma, A Lysenko, Y López, A Dehzangi, R Sharma, H Reddy, ... BMC genomics 19, 1-7, 2019 | 22 | 2019 |
| SumSec: accurate prediction of sumoylation sites using predicted secondary structure A Dehzangi, Y López, G Taherzadeh, A Sharma, T Tsunoda Molecules 23 (12), 3260, 2018 | 19 | 2018 |
| Stepwise iterative maximum likelihood clustering approach A Sharma, D Shigemizu, KA Boroevich, Y López, Y Kamatani, M Kubo, ... Bmc Bioinformatics 17, 1-14, 2016 | 19 | 2016 |
| Computer aided diagnosis system to detect breast cancer pathological lesions Y López, A Novoa, MA Guevara, N Quintana, A Silva Progress in Pattern Recognition, Image Analysis and Applications 5197, 453-460, 2008 | 19 | 2008 |
| C-iSUMO: a sumoylation site predictor that incorporates intrinsic characteristics of amino acid sequences Y Lopez, A Dehzangi, HM Reddy, A Sharma Computational Biology and Chemistry 87, 107235, 2020 | 17 | 2020 |
| Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana Y López, A Patil, K Nakai BMC Systems Biology 7, 1-13, 2013 | 14 | 2013 |
| Breast cancer diagnosis based on a suitable combination of deformable models and artificial neural networks techniques Y López, A Novoa, MA Guevara, A Silva Progress in Pattern Recognition, Image Analysis and Applications 4756, 803-811, 2007 | 14 | 2007 |
| Transition of adult T-cell leukemia/lymphoma clones during clinical progression S Aoki, S Firouzi, Y López, T Yamochi, K Nakano, K Uchimaru, ... International Journal of Hematology 104, 330-337, 2016 | 12 | 2016 |
| Computational Pipelines and Workflows in Bioinformatics Y López, PJ Kamola, R Sharma, D Shigemizu, T Tsunoda, A Sharma Encyclopedia of Bioinformatics and Computational Biology 3, 113-134, 2018 | 1 | 2018 |
| Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster Y López, A Vandenbon, A Nose, K Nakai PeerJ 5, e3389, 2017 | 1 | 2017 |
| A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster Y López, A Vandenbon, K Nakai Plos one 9 (8), e104342, 2014 | 1 | 2014 |
| Multi-representation DeepInsight: an improvement on tabular data analysis A Sharma, Y Lopez, S JIA, A Lysenko, K Boroevich, T Tsunoda bioRxiv, 2023.08. 02.551620, 2023 | | 2023 |
