| Ecology and exploration of the rare biosphere MDJ Lynch, JD Neufeld Nature Reviews Microbiology 13 (4), 217-229, 2015 | 1128 | 2015 |
| Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end Illumina reads AK Bartram, MDJ Lynch, JC Stearns, G Moreno-Hagelsieb, JD Neufeld Applied and environmental microbiology 77 (11), 3846-3852, 2011 | 1004 | 2011 |
| Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice G De Palma, MDJ Lynch, J Lu, VT Dang, Y Deng, J Jury, G Umeh, ... Science translational medicine 9 (379), eaaf6397, 2017 | 555 | 2017 |
| Bacterial biogeography of the human digestive tract JC Stearns, MDJ Lynch, DB Senadheera, HC Tenenbaum, MB Goldberg, ... Scientific reports 1 (1), 170, 2011 | 478 | 2011 |
| A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)1 JE Sutherland, SC Lindstrom, WA Nelson, J Brodie, MDJ Lynch, ... Journal of phycology 47 (5), 1131-1151, 2011 | 430 | 2011 |
| Evaluating bias of Illumina-based bacterial 16S rRNA gene profiles K Kennedy, MW Hall, MDJ Lynch, G Moreno-Hagelsieb, JD Neufeld Applied and environmental microbiology 80 (18), 5717-5722, 2014 | 290 | 2014 |
| Exploring links between pH and bacterial community composition in soils from the Craibstone Experimental Farm AK Bartram, X Jiang, MDJ Lynch, AP Masella, GW Nicol, J Dushoff, ... FEMS microbiology ecology 87 (2), 403-415, 2014 | 200 | 2014 |
| Aquatic metagenomes implicate Thaumarchaeota in global cobalamin production AC Doxey, DA Kurtz, MDJ Lynch, LA Sauder, JD Neufeld The ISME journal 9 (2), 461-471, 2015 | 190 | 2015 |
| Diversity of basidiomycetes in Michigan agricultural soils MDJ Lynch, RG Thorn Applied and environmental microbiology 72 (11), 7050-7056, 2006 | 135 | 2006 |
| Prevalence of anaerobic ammonium-oxidizing bacteria in contaminated groundwater TA Moore, Y Xing, B Lazenby, MDJ Lynch, S Schiff, WD Robertson, ... Environmental science & technology 45 (17), 7217-7225, 2011 | 128 | 2011 |
| Bacterial community composition of chronic periodontitis and novel oral sampling sites for detecting disease indicators V Galimanas, MW Hall, N Singh, MDJ Lynch, M Goldberg, H Tenenbaum, ... Microbiome 2, 1-13, 2014 | 105 | 2014 |
| Targeted recovery of novel phylogenetic diversity from next-generation sequence data MDJ Lynch, AK Bartram, JD Neufeld The ISME journal 6 (11), 2067-2077, 2012 | 69 | 2012 |
| AXIOME: automated exploration of microbial diversity MDJ Lynch, AP Masella, MW Hall, AK Bartram, JD Neufeld GigaScience 2 (1), 2047-217X-2-3, 2013 | 55 | 2013 |
| Fungi and eukaryotic algae RG THORN, MDJ LYNCH Soil microbiology, ecology and biochemistry, 145-162, 2007 | 48 | 2007 |
| Effects of laboratory domestication on the rodent gut microbiome KL Bowerman, SCL Knowles, JE Bradley, L Baltrūnaitė, MDJ Lynch, ... ISME communications 1 (1), 49, 2021 | 43 | 2021 |
| High throughput sequencing of microRNA in rainbow trout plasma, mucus, and surrounding water following acute stress H Ikert, MDJ Lynch, AC Doxey, JP Giesy, MR Servos, BA Katzenback, ... Frontiers in Physiology 11, 588313, 2021 | 35 | 2021 |
| Insights into the evolutionary origins of clostridial neurotoxins from analysis of the Clostridium botulinum strain A neurotoxin gene cluster AC Doxey, MDJ Lynch, KM Müller, EM Meiering, BJ McConkey BMC evolutionary biology 8, 1-9, 2008 | 35 | 2008 |
| Porphyra: Complex Life Histories in a Harsh Environment: P. umbilicalis, an Intertidal Red Alga for Genomic Analysis E Gantt, GM Berg, D Bhattacharya, NA Blouin, JA Brodie, CX Chan, ... Red algae in the genomic age, 129-148, 2010 | 33 | 2010 |
| Dynamics of microbial populations and diversity in NAPL contaminated peat soil under varying water table conditions PK Gupta, B Gharedaghloo, M Lynch, J Cheng, M Strack, TC Charles, ... Environmental Research 191, 110167, 2020 | 28 | 2020 |
| Microbial community analysis using high‐throughput amplicon sequencing D Ionescu, WA Overholt, MDJ Lynch, JD Neufeld, A Naqib, SJ Green Manual of environmental microbiology, 2.4. 2-1-2.4. 2-26, 2016 | 28 | 2016 |
