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Jay Ghurye
Jay Ghurye
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Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
14672021
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ...
PLoS computational biology 15 (8), e1007273, 2019
6642019
De novo assembly of the cattle reference genome with single-molecule sequencing
BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ...
Gigascience 9 (3), giaa021, 2020
4342020
Scaffolding of long read assemblies using long range contact information
J Ghurye, M Pop, S Koren, D Bickhart, CS Chin
BMC genomics 18, 1-11, 2017
2272017
Metagenomic Assembly: Overview, Challenges and Applications
J Ghurye, V Cepeda-Espinoza, M Pop
The Yale Journal of Biology and Medicine 89 (3), 353-362, 2016
1872016
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
156*2021
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes
ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ...
Briefings in bioinformatics 20 (4), 1140-1150, 2019
1492019
Targeting SWI/SNF ATPases in enhancer-addicted prostate cancer
L Xiao, A Parolia, Y Qiao, P Bawa, S Eyunni, R Mannan, SE Carson, ...
Nature 601 (7893), 434-439, 2022
1362022
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
1072022
Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle
WY Low, R Tearle, R Liu, S Koren, A Rhie, DM Bickhart, BD Rosen, ...
Nature communications 11 (1), 2071, 2020
1002020
Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation
DM Bickhart, M Watson, S Koren, K Panke-Buisse, LM Cersosimo, ...
Genome biology 20, 1-18, 2019
862019
Improved reference genome of the arboviral vector Aedes albopictus
U Palatini, R Masri, LV Cosme, S Koren, F Thibaud-Nissen, JK Biedler, ...
Genome Biology 21 (215), 2020
842020
Modern technologies and algorithms for scaffolding assembled genomes
J Ghurye, M Pop
PLoS computational biology 15 (6), e1006994, 2019
632019
A chromosome-scale assembly of the major African malaria vector Anopheles funestus
J Ghurye, S Koren, ST Small, S Redmond, P Howell, AM Phillippy, ...
Gigascience 8 (6), giz063, 2019
502019
A framework to model human behavior at large scale during natural disasters
J Ghurye, G Krings, V Frias-Martinez
2016 17th IEEE International Conference on Mobile Data Management (MDM) 1, 18-27, 2016
382016
New insights into mammalian sex chromosome structure and evolution using high-quality sequences from bovine X and Y chromosomes
R Liu, WY Low, R Tearle, S Koren, J Ghurye, A Rhie, AM Phillippy, ...
BMC genomics 20, 1-11, 2019
352019
MetaCarvel: linking assembly graph motifs to biological variants
J Ghurye, T Treangen, M Fedarko, WJ Hervey, M Pop
Genome biology 20, 1-14, 2019
262019
A critical assessment of gene catalogs for metagenomic analysis
S Commichaux, N Shah, J Ghurye, A Stoppel, JA Goodheart, GG Luque, ...
Bioinformatics 37 (18), 2848-2857, 2021
212021
Better identification of repeats in metagenomic scaffolding
J Ghurye, M Pop
Algorithms in Bioinformatics: 16th International Workshop, WABI 2016, Aarhus …, 2016
112016
Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up …
JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ...
Microbiome 6, 1-10, 2018
102018
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Articles 1–20