Siddarth Selvaraj
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Topological domains in mammalian genomes identified by analysis of chromatin interactions
JR Dixon, S Selvaraj, F Yue, A Kim, Y Li, Y Shen, M Hu, JS Liu, B Ren
Nature 485 (7398), 376-380, 2012
Chromatin architecture reorganization during stem cell differentiation
JR Dixon, I Jung, S Selvaraj, Y Shen, JE Antosiewicz-Bourget, AY Lee, ...
Nature 518 (7539), 331-336, 2015
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
A high-resolution map of the three-dimensional chromatin interactome in human cells
F Jin, Y Li, JR Dixon, S Selvaraj, Z Ye, AY Lee, CA Yen, AD Schmitt, ...
Nature 503 (7475), 290-294, 2013
Telomere-to-telomere assembly of a complete human X chromosome
KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ...
Nature 585 (7823), 79-84, 2020
Integrating Hi-C links with assembly graphs for chromosome-scale assembly
J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ...
PLoS computational biology 15 (8), e1007273, 2019
Human body epigenome maps reveal noncanonical DNA methylation variation
MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ...
Nature 523 (7559), 212-216, 2015
5mC oxidation by Tet2 modulates enhancer activity and timing of transcriptome reprogramming during differentiation
GC Hon, CX Song, T Du, F Jin, S Selvaraj, AY Lee, C Yen, Z Ye, SQ Mao, ...
Molecular cell 56 (2), 286-297, 2014
Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing
S Selvaraj, JR Dixon, V Bansal, B Ren
Nature biotechnology 31 (12), 1111-1118, 2013
HiCNorm: removing biases in Hi-C data via Poisson regression
M Hu, K Deng, S Selvaraj, Z Qin, B Ren, JS Liu
Bioinformatics 28 (23), 3131-3133, 2012
Integrative analysis of haplotype-resolved epigenomes across human tissues
D Leung, I Jung, N Rajagopal, A Schmitt, S Selvaraj, AY Lee, CA Yen, ...
Nature 518 (7539), 350-354, 2015
Bayesian inference of spatial organizations of chromosomes
M Hu, K Deng, Z Qin, J Dixon, S Selvaraj, J Fang, B Ren, JS Liu
PLoS computational biology 9 (1), e1002893, 2013
CRISPR reveals a distal super-enhancer required for Sox2 expression in mouse embryonic stem cells
Y Li, CM Rivera, H Ishii, F Jin, S Selvaraj, AY Lee, JR Dixon, B Ren
PloS one 9 (12), e114485, 2014
Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression
WW Greenwald, H Li, P Benaglio, D Jakubosky, H Matsui, A Schmitt, ...
Nature communications 10 (1), 1054, 2019
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
Accurate molecular deconvolution of mixture samples
S Selvaraj, N Heintzman, CE Laing
US Patent 12,018,314, 2024
Complete haplotype phasing of the MHC and KIR loci with targeted HaploSeq
S Selvaraj, AD Schmitt, JR Dixon, B Ren
BMC genomics 16, 1-7, 2015
Correction: Corrigendum: Human body epigenome maps reveal noncanonical DNA methylation variation
MD Schultz, Y He, JW Whitaker, M Hariharan, EA Mukamel, D Leung, ...
Nature 530 (7589), 242-242, 2016
Spatial co-fragmentation pattern of cell-free DNA recapitulates in vivo chromatin organization and identifies tissues-of-origin
Y Liu, TY Liu, DE Weinberg, BW White, CJ De La Torre, CL Tan, ...
BioRxiv, 564773, 2019
The association of self-blame with treatment preferences in a multi-country cohort of advanced cancer patients from the APPROACH study
B Doble, E Lau, C Malhotra, S Ozdemir, I Teo, EA Finkelstein, ...
Journal of Psychosomatic Research 139, 110284, 2020
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