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Rodrigo Vargas Honorato
Rodrigo Vargas Honorato
Utrecht University - Computational Structural Biology Lab
Verified email at uu.nl
Title
Cited by
Cited by
Year
Structural biology in the clouds: the WeNMR-EOSC ecosystem
RV Honorato, PI Koukos, B Jiménez-García, A Tsaregorodtsev, M Verlato, ...
Frontiers in molecular biosciences 8, 729513, 2021
3342021
Molecular dynamics simulations in drug discovery and pharmaceutical development
OMH Salo-Ahen, I Alanko, R Bhadane, AMJJ Bonvin, RV Honorato, ...
Processes 9 (1), 71, 2020
2232020
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
KVFinder: steered identification of protein cavities as a PyMOL plugin
SHP Oliveira, FAN Ferraz, RV Honorato, J Xavier-Neto, TJP Sobreira, ...
BMC bioinformatics 15, 1-8, 2014
1082014
Active glutaminase C self-assembles into a supratetrameric oligomer that can be disrupted by an allosteric inhibitor
APS Ferreira, A Cassago, K de Almeida Gonçalves, MM Dias, ...
Journal of Biological Chemistry 288 (39), 28009-28020, 2013
872013
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment
MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ...
Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021
762021
Oligomerization as a strategy for cold adaptation: Structure and dynamics of the GH1 β-glucosidase from Exiguobacterium antarcticum B7
LM Zanphorlin, PO de Giuseppe, RV Honorato, CCC Tonoli, J Fattori, ...
Scientific reports 6 (1), 23776, 2016
712016
Molecular mechanisms associated with xylan degradation by Xanthomonas plant pathogens
CR Santos, ZB Hoffmam, VP de Matos Martins, LM Zanphorlin, ...
Journal of Biological Chemistry 289 (46), 32186-32200, 2014
662014
Less is more: coarse-grained integrative modeling of large biomolecular assemblies with HADDOCK
J Roel-Touris, CG Don, R V. Honorato, JP Rodrigues, AMJJ Bonvin
Journal of chemical theory and computation 15 (11), 6358-6367, 2019
472019
Identification of novel interaction between ADAM17 (a disintegrin and metalloprotease 17) and thioredoxin-1
AZB Aragão, MLC Nogueira, DC Granato, FM Simabuco, RV Honorato, ...
Journal of Biological Chemistry 287 (51), 43071-43082, 2012
422012
The molecular motor Myosin Va interacts with the cilia-centrosomal protein RPGRIP1L
LHP Assis, RMP Silva-Junior, LG Dolce, MR Alborghetti, RV Honorato, ...
Scientific reports 7 (1), 43692, 2017
382017
Structural insights into functional overlapping and differentiation among myosin V motors
AFZ Nascimento, DM Trindade, CCC Tonoli, PO de Giuseppe, LHP Assis, ...
Journal of Biological Chemistry 288 (47), 34131-34145, 2013
372013
The mechanism by which a distinguishing arabinofuranosidase can cope with internal di-substitutions in arabinoxylans
CR Dos Santos, PO de Giuseppe, FHM de Souza, LM Zanphorlin, ...
Biotechnology for biofuels 11, 1-19, 2018
342018
MARTINI-based protein-DNA coarse-grained HADDOCKing
RV Honorato, J Roel-Touris, AMJJ Bonvin
Frontiers in molecular biosciences 6, 102, 2019
332019
Mechanistic strategies for catalysis adopted by evolutionary distinct family 43 arabinanases
CR Santos, CC Polo, MCMF Costa, AFZ Nascimento, AN Meza, J Cota, ...
Journal of Biological Chemistry 289 (11), 7362-7373, 2014
302014
PI class metalloproteinase from Bothrops moojeni venom is a post-proline cleaving peptidase with kininogenase activity: Insights into substrate selectivity and kinetic behavior
DN Okamoto, MY Kondo, LCG Oliveira, RV Honorato, LM Zanphorlin, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (3), 545-552, 2014
282014
Kinase inhibitor profile for human nek1, nek6, and nek7 and analysis of the structural basis for inhibitor specificity
EC Moraes, GV Meirelles, RV Honorato, TDACB De Souza, EE De Souza, ...
Molecules 20 (1), 1176-1191, 2015
272015
Bactericidal activity identified in 2S albumin from sesame seeds and in silico studies of structure–function relations
S Maria-Neto, RV Honorato, FT Costa, RG Almeida, DS Amaro, ...
The Protein Journal 30, 340-350, 2011
242011
Structural basis of exo-β-mannanase activity in the GH2 family
MN Domingues, FHM Souza, PS Vieira, MAB de Morais, LM Zanphorlin, ...
Journal of Biological Chemistry 293 (35), 13636-13649, 2018
212018
Structural studies of the Trypanosoma cruzi Old Yellow Enzyme: insights into enzyme dynamics and specificity
MT Murakami, NC Rodrigues, LM Gava, RV Honorato, F Canduri, ...
Biophysical chemistry 184, 44-53, 2013
192013
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