| ATLAS of biochemistry: a repository of all possible biochemical reactions for synthetic biology and metabolic engineering studies N Hadadi, J Hafner, A Shajkofci, A Zisaki, V Hatzimanikatis ACS synthetic biology 5 (10), 1155-1166, 2016 | 176 | 2016 |
| Warmth prevents bone loss through the gut microbiota C Chevalier, S Kieser, M Çolakoğlu, N Hadadi, J Brun, D Rigo, ... Cell metabolism 32 (4), 575-590. e7, 2020 | 135 | 2020 |
| Design of computational retrobiosynthesis tools for the design of de novo synthetic pathways N Hadadi, V Hatzimanikatis Current opinion in chemical biology 28, 99-104, 2015 | 132 | 2015 |
| Enzyme annotation for orphan and novel reactions using knowledge of substrate reactive sites N Hadadi, H MohammadiPeyhani, L Miskovic, M Seijo, V Hatzimanikatis Proceedings of the National Academy of Sciences 116 (15), 7298-7307, 2019 | 93 | 2019 |
| Enhanced flux prediction by integrating relative expression and relative metabolite abundance into thermodynamically consistent metabolic models V Pandey, N Hadadi, V Hatzimanikatis PLoS computational biology 15 (5), e1007036, 2019 | 80 | 2019 |
| Genomic changes underlying host specialization in the bee gut symbiont Lactobacillus Firm5 KM Ellegaard, S Brochet, G Bonilla‐Rosso, O Emery, N Glover, N Hadadi, ... Molecular ecology 28 (9), 2224-2237, 2019 | 60 | 2019 |
| Intestinal microbiota as a route for micronutrient bioavailability N Hadadi, V Berweiler, H Wang, M Trajkovski Current opinion in endocrine and metabolic research 20, 100285, 2021 | 52 | 2021 |
| Discovery and evaluation of biosynthetic pathways for the production of five methyl ethyl ketone precursors M Tokic, N Hadadi, M Ataman, D Neves, BE Ebert, LM Blank, L Miskovic, ... ACS synthetic biology 7 (8), 1858-1873, 2018 | 43 | 2018 |
| Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models N Hadadi, V Pandey, A Chiappino-Pepe, M Morales, H Gallart-Ayala, ... NPJ systems biology and applications 6 (1), 1, 2020 | 41 | 2020 |
| Cold exposure protects from neuroinflammation through immunologic reprogramming M Spiljar, K Steinbach, D Rigo, N Suárez-Zamorano, I Wagner, N Hadadi, ... Cell Metabolism 33 (11), 2231-2246. e8, 2021 | 37 | 2021 |
| Exploring biochemical pathways for mono-ethylene glycol (MEG) synthesis from synthesis gas MA Islam, N Hadadi, M Ataman, V Hatzimanikatis, G Stephanopoulos Metabolic engineering 41, 173-181, 2017 | 37 | 2017 |
| Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data BD Özel Duygan, N Hadadi, AF Babu, M Seyfried, JR van der Meer Communications biology 3 (1), 379, 2020 | 33 | 2020 |
| Environmental connectivity controls diversity in soil microbial communities M Dubey, N Hadadi, S Pelet, N Carraro, DR Johnson, JR van der Meer Communications Biology 4 (1), 492, 2021 | 26 | 2021 |
| AMPK profiling in rodent and human pancreatic beta-cells under nutrient-rich metabolic stress T Brun, C Jiménez-Sánchez, JGS Madsen, N Hadadi, D Duhamel, ... International Journal of Molecular Sciences 21 (11), 3982, 2020 | 23 | 2020 |
| Molecular thermodynamics of metabolism: quantum thermochemical calculations for key metabolites N Hadadi, M Ataman, V Hatzimanikatis, C Panayiotou Physical Chemistry Chemical Physics 17 (16), 10438-10453, 2015 | 23 | 2015 |
| A computational framework for integration of lipidomics data into metabolic pathways N Hadadi, KC Soh, M Seijo, A Zisaki, X Guan, MR Wenk, V Hatzimanikatis Metabolic engineering 23, 1-8, 2014 | 22 | 2014 |
| Molecular thermodynamics of metabolism: hydration quantities and the equation-of-state approach C Panayiotou, S Mastrogeorgopoulos, M Ataman, N Hadadi, ... Physical Chemistry Chemical Physics 18 (47), 32570-32592, 2016 | 19 | 2016 |
| Acetobacteraceae in the honey bee gut comprise two distant clades with diverging metabolism and ecological niches G Bonilla-Rosso, C Paredes Juan, S Das, KM Ellegaard, O Emery, ... BioRxiv, 861260, 2019 | 16 | 2019 |
| Reconstruction of biological pathways and metabolic networks from in silico labeled metabolites N Hadadi, J Hafner, KC Soh, V Hatzimanikatis Biotechnology journal 12 (1), 1600464, 2017 | 16 | 2017 |
| A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions E Vayena, A Chiappino-Pepe, H MohammadiPeyhani, Y Francioli, ... Proceedings of the National Academy of Sciences 119 (46), e2211197119, 2022 | 15 | 2022 |
