David Páez-Espino
David Páez-Espino
Mammoth BioSciences // DOE-JGI
Verified email at lbl.gov
Title
Cited by
Cited by
Year
Uncovering Earth’s virome
D Paez-Espino, EA Eloe-Fadrosh, GA Pavlopoulos, AD Thomas, ...
Nature 536 (7617), 425-430, 2016
3812016
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ...
Nucleic acids research 41 (D1), D666-D675, 2013
3552013
Microbial responses to environmental arsenic
D Páez-Espino, J Tamames, V de Lorenzo, D Cánovas
Biometals 22 (1), 117-130, 2009
2812009
The standard operating procedure of the DOE-JGI microbial genome annotation pipeline (MGAP v. 4)
M Huntemann, NN Ivanova, K Mavromatis, HJ Tripp, D Paez-Espino, ...
Standards in genomic sciences 10 (1), 1-6, 2015
2222015
Strong bias in the bacterial CRISPR elements that confer immunity to phage
D Paez-Espino, W Morovic, CL Sun, BC Thomas, K Ueda, B Stahl, ...
Nature Communications 4, 1430, 2013
1632013
1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life
S Mukherjee, R Seshadri, NJ Varghese, EA Eloe-Fadrosh, ...
Nature biotechnology 35 (7), 676, 2017
1372017
Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection
R Seshadri, SC Leahy, GT Attwood, KH Teh, SC Lambie, AL Cookson, ...
Nature biotechnology 36 (4), 359, 2018
1212018
CRISPR immunity drives rapid phage genome evolution in Streptococcus thermophilus
D Paez-Espino, I Sharon, W Morovic, B Stahl, BC Thomas, R Barrangou, ...
MBio 6 (2), 2015
1192015
Programmed DNA destruction by miniature CRISPR-Cas14 enzymes
LB Harrington, D Burstein, JS Chen, D Paez-Espino, E Ma, IP Witte, ...
Science 362 (6416), 839-842, 2018
1132018
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses
D Paez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, E Szeto, ...
Nucleic acids research, gkw1030, 2016
872016
Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
EA Eloe-Fadrosh, D Paez-Espino, J Jarett, PF Dunfield, BP Hedlund, ...
Nature communications 7 (1), 1-10, 2016
742016
A thermostable Cas9 with increased lifetime in human plasma
LB Harrington, D Paez-Espino, BT Staahl, JS Chen, E Ma, NC Kyrpides, ...
Nature communications 8 (1), 1-8, 2017
622017
Minimum information about an uncultivated virus genome (MIUViG)
S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ...
Nature biotechnology 37 (1), 29-37, 2019
612019
IMG/VR v. 2.0: an integrated data management and analysis system for cultivated and environmental viral genomes
D Paez-Espino, S Roux, IMA Chen, K Palaniappan, A Ratner, K Chu, ...
Nucleic acids research 47 (D1), D678-D686, 2019
422019
Murine colitis reveals a disease-associated bacteriophage community
BA Duerkop, M Kleiner, D Paez-Espino, W Zhu, B Bushnell, B Hassell, ...
Nature microbiology 3 (9), 1023-1031, 2018
412018
Functional coexistence of twin arsenic resistance systems in Pseudomonas putida KT2440
AD Páez‐Espino, G Durante‐Rodríguez, V de Lorenzo
Environmental Microbiology 17 (1), 229-238, 2015
332015
Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
D Paez-Espino, GA Pavlopoulos, NN Ivanova, NC Kyrpides
nature protocols 12 (8), 1673, 2017
282017
Antarctic archaea–virus interactions: metaproteome-led analysis of invasion, evasion and adaptation
B Tschitschko, TJ Williams, MA Allen, D Páez-Espino, N Kyrpides, ...
The ISME journal 9 (9), 2094-2107, 2015
282015
On the origin of reverse transcriptase-using CRISPR-Cas systems and their hyperdiverse, enigmatic spacer repertoires
S Silas, KS Makarova, S Shmakov, D Páez-Espino, G Mohr, Y Liu, ...
MBio 8 (4), 2017
262017
Empirical comparison of visualization tools for larger-scale network analysis
GA Pavlopoulos, D Paez-Espino, NC Kyrpides, I Iliopoulos
Advances in bioinformatics 2017, 2017
222017
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Articles 1–20