Matthew Pocock

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Anil WipatProfessor of Bioinformatics Newcastle UniversityVerified email at ncl.ac.uk
Jacob BealBBN TechnologiesVerified email at bbn.com
Goksel MisirliSenior Lecturer, Keele UniversityVerified email at keele.ac.uk
Phillip LordLecturer in Computing Science, Newcastle UniversityVerified email at newcastle.ac.uk
Herbert M SauroUniversity of WashingtonVerified email at u.washington.edu
Carole GobleProfessor of Computer Science, University of ManchesterVerified email at cs.man.ac.uk
Robert StevensProfessor of Computer Science, Department of Computer Science, university of manchesterVerified email at manchester.ac.uk
Duncan HullLecturer (Assistant Professor), Department of Computer Science, University of Manchester, UKVerified email at manchester.ac.uk
Jason E StajichProfessor, University of California, RiversideVerified email at ucr.edu
Hilmar LappDirector of Informatics, Center for Genomic and Computational Biology, Duke UniversityVerified email at duke.edu
Ewan BirneyDirector, EMBL-EBIVerified email at ebi.ac.uk
John H GennariBiomedical & Health Informatics, University of WashingtonVerified email at uw.edu
Chris WroeHealth Informatician, BMJ GroupVerified email at bmjgroup.com
Lincoln SteinDirector of Informatics and Biocomputing, Ontario Institute for Cancer Research Verified email at oicr.on.ca
Mark D WilkinsonBBVA-UPM Industry Chair on Biotechnology and Isaac Peral Distinguished Researcher, UPMVerified email at illuminae.com
Christopher J MungallLawrence Berkeley National LaboratoryVerified email at lbl.gov
Guy-Bart StanProfessor of BioSystems Engineering and Control, RAEng Chair, Bioengineering, Imperial CollegeVerified email at imperial.ac.uk
Swapnil BhatiaCATALOG Technologies Inc.Verified email at catalogdna.com
Allyson L. ListerUniversity of Oxford, Oxford e-Research CentreVerified email at oerc.ox.ac.uk
Michal GaldzickiSenior Fellow, University of WashingtonVerified email at uw.edu

Matthew Pocock

Computing Science, Newcastle University

Verified email at ncl.ac.uk

bioinformatics semantic web synthetic biology


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Taverna: a tool for the composition and enactment of bioinformatics workflows T Oinn, M Addis, J Ferris, D Marvin, M Senger, M Greenwood, T Carver, ... Bioinformatics 20 (17), 3045-3054, 2004	1997	2004
The Bioperl toolkit: Perl modules for the life sciences JE Stajich, D Block, K Boulez, SE Brenner, SA Chervitz, C Dagdigian, ... Genome research 12 (10), 1611-1618, 2002	1938	2002
The Ensembl genome database project T Hubbard, D Barker, E Birney, G Cameron, Y Chen, L Clark, T Cox, J Cuff, ... Nucleic acids research 30 (1), 38-41, 2002	1867	2002
Taverna: a tool for building and running workflows of services D Hull, K Wolstencroft, R Stevens, C Goble, MR Pocock, P Li, T Oinn Nucleic acids research 34 (suppl_2), W729-W732, 2006	1299	2006
Taverna: lessons in creating a workflow environment for the life sciences T Oinn, M Greenwood, M Addis, MN Alpdemir, J Ferris, K Glover, C Goble, ... Concurrency and computation: Practice and experience 18 (10), 1067-1100, 2006	1011	2006
Controlled vocabularies and semantics in systems biology M Courtot, N Juty, C Knüpfer, D Waltemath, A Zhukova, A Dräger, ... Molecular systems biology 7 (1), 543, 2011	302	2011
The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology M Galdzicki, KP Clancy, E Oberortner, M Pocock, JY Quinn, CA Rodriguez, ... Nature biotechnology 32 (6), 545-550, 2014	292	2014
BioJava: an open-source framework for bioinformatics RCG Holland, TA Down, M Pocock, A Prlić, D Huen, K James, S Foisy, ... Bioinformatics 24 (18), 2096-2097, 2008	289	2008
SBOL visual: a graphical language for genetic designs JY Quinn, RS Cox III, A Adler, J Beal, S Bhatia, Y Cai, J Chen, K Clancy, ... PLoS biology 13 (12), e1002310, 2015	91	2015
Sharing structure and function in biological design with SBOL 2.0 N Roehner, J Beal, K Clancy, B Bartley, G Misirli, R Grunberg, ... ACS synthetic biology 5 (6), 498-506, 2016	86	2016
Synthetic biology open language (SBOL) version 2.0. 0 B Bartley, J Beal, K Clancy, G Misirli, N Roehner, E Oberortner, M Pocock, ... Journal of integrative bioinformatics 12 (2), 902-991, 2015	67	2015
Performing statistical analyses on quantitative data in Taverna workflows: an example using R and maxdBrowse to identify differentially-expressed genes from microarray data P Li, JI Castrillo, G Velarde, I Wassink, S Soiland-Reyes, S Owen, ... BMC bioinformatics 9, 1-11, 2008	57	2008
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows T Katayama, K Arakawa, M Nakao, K Ono, KF Aoki-Kinoshita, ... Journal of biomedical semantics 1, 1-19, 2010	54	2010
BioJava: open source components for bioinformatics M Pocock, T Down, T Hubbard ACM Sigbio Newsletter 20 (2), 10-12, 2000	51	2000
The differential gene expression profiles of proximal and distal muscle groups are altered in pre-pathological dysferlin-deficient mice M von der Hagen, SH Laval, LM Cree, F Haldane, M Pocock, I Wappler, ... Neuromuscular Disorders 15 (12), 863-877, 2005	48	2005
An integrated dataset for in silico drug discovery SJ Cockell, J Weile, P Lord, C Wipat, D Andriychenko, M Pocock, ... Journal of integrative bioinformatics 7 (3), 15-27, 2010	43	2010
Synthetic biology open language (SBOL) version 1.1. 0 M Galdzicki, M Wilson, CA Rodriguez, MR Pocock, E Oberortner, L Adam, ...	37	2012
Synthetic biology open language (SBOL) version 2.2. 0 RS Cox III, C Madsen, JA McLaughlin, T Nguyen, N Roehner, B Bartley, ... Journal of integrative bioinformatics 15 (1), 20180001, 2018	34	2018
Data integration and mining for synthetic biology design G Mısırlı, J Hallinan, M Pocock, P Lord, JA McLaughlin, H Sauro, A Wipat ACS synthetic biology 5 (10), 1086-1097, 2016	34	2016
The SBOL stack: a platform for storing, publishing, and sharing synthetic biology designs C Madsen, JA McLaughlin, G Mısırlı, M Pocock, K Flanagan, J Hallinan, ... ACS synthetic biology 5 (6), 487-497, 2016	33	2016

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