Peter M Huggins
Peter M Huggins
Research Analyst, Carnegie Mellon University
Verified email at
Cited by
Cited by
Cross species analysis of microarray expression data
Y Lu, P Huggins, Z Bar-Joseph
Bioinformatics 25 (12), 1476-1483, 2009
The hyperdeterminant and triangulations of the 4-cube
P Huggins, B Sturmfels, J Yu, D Yuster
Mathematics of Computation 77 (263), 1653-1679, 2008
DECOD: fast and accurate discriminative DNA motif finding
P Huggins, S Zhong, I Shiff, R Beckerman, O Laptenko, C Prives, ...
Bioinformatics 27 (17), 2361-2367, 2011
Parametric alignment of Drosophila genomes
CN Dewey, PM Huggins, K Woods, B Sturmfels, L Pachter
PLoS Computational Biology 2 (6), e73, 2006
On the optimality of the neighbor-joining algorithm
K Eickmeyer, P Huggins, L Pachter, R Yoshida
Algorithms for Molecular Biology 3, 1-11, 2008
Short rational functions for toric algebra and applications
JA De Loera, D Haws, R Hemmecke, P Huggins, B Sturmfels, R Yoshida
Journal of Symbolic Computation 38 (2), 959-973, 2004
Detection of radioactive sources in urban scenes using Bayesian Aggregation of data from mobile spectrometers
P Tandon, P Huggins, R Maclachlan, A Dubrawski, K Nelson, S Labov
Information Systems 57, 195-206, 2016
kdetrees: non-parametric estimation of phylogenetic tree distributions
G Weyenberg, PM Huggins, CL Schardl, DK Howe, R Yoshida
Bioinformatics 30 (16), 2280-2287, 2014
Toward the human genotope
P Huggins, L Pachter, B Sturmfels
Bulletin of mathematical biology 69, 2723-2735, 2007
A computational study of integer programming algorithms based on Barvinok's rational functions
JA De Loera, D Haws, R Hemmecke, P Huggins, R Yoshida
Discrete Optimization 2 (2), 135-144, 2005
Three kinds of integer programming algorithms based on barvinok’s rational functions
JA De Loera, D Haws, R Hemmecke, P Huggins, R Yoshida
Integer Programming and Combinatorial Optimization: 10th International IPCO …, 2004
iB4e: A Software Framework for Parametrizing Specialized LP Problems
P Huggins
Mathematical Software-ICMS 2006: Second International Congress on …, 2006
First steps toward the geometry of cophylogeny
P Huggins, M Owen, R Yoshida
Harmony of Gröbner bases and the modern industrial society, 99-116, 2012
Bayes estimators for phylogenetic reconstruction
PM Huggins, W Li, D Haws, T Friedrich, J Liu, R Yoshida
Systematic biology 60 (4), 528-540, 2011
Evaluation of coded aperture radiation detectors using a Bayesian approach
K Miller, P Huggins, S Labov, K Nelson, A Dubrawski
Nuclear Instruments and Methods in Physics Research Section A: Accelerators …, 2016
A support vector machine based test for incongruence between sets of trees in tree space
DC Haws, P Huggins, EM O’Neill, DW Weisrock, R Yoshida
BMC bioinformatics 13, 1-14, 2012
A User’s Guide for LattE v1. 1, 2003
JA De Loera, D Haws, R Hemmecke, P Huggins, J Tauzer, R Yoshida
Software package LattE is available at http://www. math. ucdavis. edu/∼ latte, 1997
Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
P Papasaikas, A Rao, P Huggins, J Valcarcel, AJ Lopez
BMC genomics 16 (Suppl 10), S7, 2015
Statistical phylogenetic tree analysis using differences of means
E Arnaoudova, DC Haws, P Huggins, JW Jaromczyk, N Moore, ...
Frontiers in neuroscience 4, 47, 2010
Predicting neurological recovery with canonical autocorrelation embeddings
M De-Arteaga, J Chen, P Huggins, J Elmer, G Clermont, A Dubrawski
PloS one 14 (1), e0210966, 2019
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