|KEGG for linking genomes to life and the environment|
M Kanehisa, M Araki, S Goto, M Hattori, M Hirakawa, M Itoh, T Katayama, ...
Nucleic acids research 36 (suppl_1), D480-D484, 2007
|From genomics to chemical genomics: new developments in KEGG|
M Kanehisa, S Goto, M Hattori, KF Aoki-Kinoshita, M Itoh, S Kawashima, ...
Nucleic acids research 34 (suppl_1), D354-D357, 2006
|Targeted nucleotide editing using hybrid prokaryotic and vertebrate adaptive immune systems|
K Nishida, T Arazoe, N Yachie, S Banno, M Kakimoto, M Tabata, ...
Science 353 (6305), aaf8729, 2016
|Prediction of drug–target interaction networks from the integration of chemical and genomic spaces|
Y Yamanishi, M Araki, A Gutteridge, W Honda, M Kanehisa
Bioinformatics 24 (13), i232-i240, 2008
|Programmable cells: interfacing natural and engineered gene networks|
H Kobayashi, M Kaern, M Araki, K Chung, TS Gardner, CR Cantor, ...
Proceedings of the National Academy of Sciences 101 (22), 8414-8419, 2004
|Comprehensive analysis of distinctive polyketide and nonribosomal peptide structural motifs encoded in microbial genomes|
Y Minowa, M Araki, M Kanehisa
Journal of molecular biology 368 (5), 1500-1517, 2007
|Allosteric regulation of a ribozyme activity through ligand-induced conformational change|
M Araki, Y Okuno, Y Hara, Y Sugiura
Nucleic acids research 26 (14), 3379-3384, 1998
|Circadian regulation of intracellular G-protein signalling mediates intercellular synchrony and rhythmicity in the suprachiasmatic nucleus|
A Ishida, A Miyake, M Sato, R Komatsu, F Yamazaki, I Kimura, S Tsuchiya, ...
Nature communications 2 (1), 1-9, 2011
|Development of bio-based fine chemical production through synthetic bioengineering|
KY Hara, M Araki, N Okai, S Wakai, T Hasunuma, A Kondo
Microbial Cell Factories 13 (1), 1-19, 2014
|GEM-TREND: a web tool for gene expression data mining toward relevant network discovery|
C Feng, M Araki, R Kunimoto, A Tamon, H Makiguchi, S Niijima, ...
BMC genomics 10 (1), 1-11, 2009
|Transporter engineering in biomass utilization by yeast|
KY Hara, J Kobayashi, R Yamada, D Sasaki, Y Kuriya, Y Hirono-Hara, ...
FEMS Yeast Research 17 (7), 2017
|Synthetic inhibitors of the processing of pretransfer RNA by the ribonuclease P ribozyme: enzyme inhibitors which act by binding to substrate|
Y Hori, EV Bichenkova, AN Wilton, MN El-Attug, S Sadat-Ebrahimi, ...
Biochemistry 40 (3), 603-608, 2001
|A systematic approach to time-series metabolite profiling and RNA-seq analysis of Chinese hamster ovary cell culture|
HH Hsu, M Araki, M Mochizuki, Y Hori, M Murata, P Kahar, T Yoshida, ...
Scientific reports 7 (1), 1-13, 2017
|M-path: a compass for navigating potential metabolic pathways|
M Araki, RS Cox III, H Makiguchi, T Ogawa, T Taniguchi, K Miyaoku, ...
Bioinformatics 31 (6), 905-911, 2015
|Mechanism-based tuning of insect 3, 4-dihydroxyphenylacetaldehyde synthase for synthetic bioproduction of benzylisoquinoline alkaloids|
CJ Vavricka, T Yoshida, Y Kuriya, S Takahashi, T Ogawa, F Ono, K Agari, ...
Nature communications 10 (1), 1-11, 2019
|Development of a multi-gene expression system in Xanthophyllomyces dendrorhous|
KY Hara, T Morita, M Mochizuki, K Yamamoto, C Ogino, M Araki, A Kondo
Microbial Cell Factories 13 (1), 1-8, 2014
|Evaluation and screening of efficient promoters to improve astaxanthin production in Xanthophyllomyces dendrorhous|
KY Hara, T Morita, Y Endo, M Mochizuki, M Araki, A Kondo
Applied microbiology and biotechnology 98 (15), 6787-6793, 2014
|Extraction and analysis of chemical modification patterns in drug development|
D Shigemizu, M Araki, S Okuda, S Goto, M Kanehisa
Journal of chemical information and modeling 49 (4), 1122-1129, 2009
|Engineered enzymatically active bacteriophages and methods of uses thereof|
JJ Collins, H Kobayashi, M Kearn, M Araki, A Friedland, TKT Lu
US Patent 8,182,804, 2012
|Reconstruction of metabolic pathway for isobutanol production in Escherichia coli|
S Noda, Y Mori, S Oyama, A Kondo, M Araki, T Shirai
Microbial cell factories 18 (1), 1-10, 2019