| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 638 | 2011 |
| Evolution and clinical impact of co-occurring genetic alterations in advanced-stage EGFR-mutant lung cancers CM Blakely, TBK Watkins, W Wu, B Gini, JJ Chabon, CE McCoach, ... Nature genetics 49 (12), 1693-1704, 2017 | 507 | 2017 |
| Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs RE Green, EL Braun, J Armstrong, D Earl, N Nguyen, G Hickey, ... Science 346 (6215), 1254449, 2014 | 380 | 2014 |
| The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage J Abramyan, D Badenhorst, KK Biggar, GM Borchert, CW Botka, ... Genome Biology 14 (3), R28, 2013 | 373 | 2013 |
| Inference of transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection P Ulz, S Perakis, Q Zhou, T Moser, J Belic, I Lazzeri, A Wölfler, A Zebisch, ... Nature communications 10 (1), 4666, 2019 | 215 | 2019 |
| Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution JA Cahill, RE Green, TL Fulton, M Stiller, F Jay, N Ovsyanikov, ... PLoS genetics 9 (3), e1003345, 2013 | 194 | 2013 |
| Machine learning enables detection of early-stage colorectal cancer by whole-genome sequencing of plasma cell-free DNA N Wan, D Weinberg, TY Liu, K Niehaus, EA Ariazi, D Delubac, A Kannan, ... BMC cancer 19, 1-10, 2019 | 168 | 2019 |
| Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes JA St John, EL Braun, SR Isberg, LG Miles, AY Chong, J Gongora, ... Genome Biology 13 (1), 415, 2012 | 163 | 2012 |
| Cactus graphs for genome comparisons B Paten, M Diekhans, D Earl, JS John, J Ma, B Suh, D Haussler Journal of Computational Biology 18 (3), 469-481, 2011 | 139 | 2011 |
| Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family W Gillis, J St John, B Bowerman, S Schneider BMC evolutionary biology 9 (1), 207, 2009 | 64 | 2009 |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome research 27 (5), 686-696, 2017 | 46 | 2017 |
| Oncogenic activation of the PI3-kinase p110β isoform via the tumor-derived PIK3CβD1067V kinase domain mutation E Pazarentzos, P Giannikopoulos, G Hrustanovic, J St John, VR Olivas, ... Oncogene 35 (9), 1198-1205, 2016 | 46 | 2016 |
| Integrated systems and methods for automated processing and analysis of biological samples, clinical information processing and clinical trial matching T Matsuguchi, AF Caulin, JAS John, S Soi, EC Ahmed, E Pazarentzos, ... US Patent App. 15/727,491, 2018 | 42 | 2018 |
| Integrated systems and methods for automated processing and analysis of biological samples, clinical information processing and clinical trial matching T Matsuguchi, JAS John, E Pazarentzos, W Polkinghorn, ... US Patent App. 15/727,501, 2018 | 29 | 2018 |
| Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC W Jaratlerdsiri, J Deakin, RM Godinez, X Shan, DG Peterson, S Marthey, ... PloS one 9 (12), e114631, 2014 | 26 | 2014 |
| Blood-based detection of early-stage colorectal cancer using multiomics and machine learning G Putcha, TY Liu, E Ariazi, M Bertin, A Drake, M Dzamba, G Hogan, ... Abstract presented at: the American Society of Clinical Oncology (ASCO) GI …, 2020 | 21 | 2020 |
| Cactus Graphs for Genome Comparisons B Paten, M Diekhans, D Earl, J St. John, J Ma, B Suh, D Haussler Research in Computational Molecular Biology, 410-425, 2010 | 16 | 2010 |
| Evaluation of a sensitive blood test for the detection of colorectal advanced adenomas in a prospective cohort using a multiomics approach J Lin, E Ariazi, M Dzamba, TK Hsu, S Kothen-Hill, K Li, TY Liu, S Mahajan, ... J Clin Oncol 39, 43, 2021 | 9 | 2021 |
| Inference of tumor cell-specific transcription factor binding from cell-free DNA enables tumor subtype prediction and early detection of cancer P Ulz, S Perakis, Q Zhou, T Moser, J Belic, I Lazzeri, A Wlfler, A Zebisch, ... bioRxiv, 2019 | 7 | 2019 |
| Methods for Predicting EGFR Tyrosine Kinase Inhibitor Efficacy P Giannikopoulos, JS John, J Parker, T Bivona US Patent App. 14/671,213, 2016 | 5 | 2016 |
Peter UlzFreenomeVerified email at freenome.com
