B Kirkpatrick
B Kirkpatrick
Bowtie Computing
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Cited by
Cited by
Using motion planning to study RNA folding kinetics
X Tang, B Kirkpatrick, S Thomas, G Song, NM Amato
Proceedings of the eighth annual international conference on Research in…, 2004
Divide-and-conquer with sequential Monte Carlo
F Lindsten, AM Johansen, CA Naesseth, B Kirkpatrick, TB Schn, ...
Journal of Computational and Graphical Statistics 26 (2), 445-458, 2017
A new method for mapping discontinuous antibody epitopes to reveal structural features of proteins
BM Mumey, BW Bailey, B Kirkpatrick, AJ Jesaitis, T Angel, EA Dratz
Journal of Computational Biology 10 (3-4), 555-567, 2003
Pedigree reconstruction using identity by descent
B Kirkpatrick, SC Li, RM Karp, E Halperin
Journal of Computational Biology 18 (11), 1481-1493, 2011
Efficient continuous-time Markov chain estimation
M Hajiaghayi, B Kirkpatrick, L Wang, A Bouchard-Ct
International Conference on Machine Learning, 638-646, 2014
STRALCP—structure alignment-based clustering of proteins
A Zemla, B Geisbrecht, J Smith, M Lam, B Kirkpatrick, M Wagner, T Slezak, ...
Nucleic acids research 35 (22), e150-e150, 2007
HaploPool: improving haplotype frequency estimation through DNA pools and phylogenetic modeling
B Kirkpatrick, CS Armendariz, RM Karp, E Halperin
Bioinformatics 23 (22), 3048-3055, 2007
Perfect phylogeny problems with missing values
B Kirkpatrick, K Stevens
IEEE/ACM Transactions on Computational Biology and Bioinformatics 11 (5…, 2014
Haplotype inference in complex pedigrees
B Kirkpatrick, E Halperin, RM Karp
Journal of Computational Biology 17 (3), 269-280, 2010
Comparing pedigree graphs
B Kirkpatrick, Y Reshef, H Finucane, H Jiang, B Zhu, RM Karp
Journal of Computational Biology 19 (9), 998-1014, 2012
Haplotypes versus genotypes on pedigrees
BB Kirkpatrick
Algorithms for Molecular Biology 6, 1-10, 2011
Non-identifiable pedigrees and a Bayesian solution
B Kirkpatrick
Bioinformatics Research and Applications, 139-152, 2012
Reachability bounds for chemical reaction networks and strand displacement systems
A Condon, B Kirkpatrick, J Maňuch
Natural Computing 13, 499-516, 2014
Reachability bounds for chemical reaction networks and strand displacement systems
A Condon, B Kirkpatrick, J Maňuch
DNA Computing and Molecular Programming: 18th International Conference, DNA…, 2012
Turing’s Imitation Game: a discussion with the benefit of hind-sight
B Kirkpatrick, B Klingner
Berkeley Computer Science course. See http://www. cs. berkeley. edu…, 2009
Efficient computation of the kinship coefficients
B Kirkpatrick, S Ge, L Wang
Bioinformatics, bty725, 2018
A new model for approximating RNA folding trajectories and population kinetics
B Kirkpatrick, M Hajiaghayi, A Condon
Computational Science & Discovery 6 (1), 014003, 2013
Correcting for cryptic relatedness in genome-wide association studies
B Kirkpatrick, A Bouchard-Ct
arXiv preprint arXiv:1602.07956, 2016
Optimal state-space reduction for pedigree hidden Markov models
B Kirkpatrick, K Kirkpatrick
arXiv preprint arXiv:1202.2468, 2012
Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values
K Stevens, B Kirkpatrick
Algorithms in Bioinformatics: 11th International Workshop, WABI 2011…, 2011
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