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Yukihiro Murakami
Yukihiro Murakami
Assistant Professor, TU Delft
Verified email at tudelft.nl
Title
Cited by
Cited by
Year
On cherry-picking and network containment
R Janssen, Y Murakami
Theoretical Computer Science 856, 121-150, 2021
37*2021
Distinguishing level-1 phylogenetic networks on the basis of data generated by Markov processes
E Gross, L van Iersel, R Janssen, M Jones, C Long, Y Murakami
Journal of Mathematical Biology 83 (3), 1-24, 2021
242021
Orienting undirected phylogenetic networks
KT Huber, L van Iersel, R Janssen, M Jones, V Moulton, Y Murakami, ...
Journal of Computer and System Sciences 140, 103480, 2024
22*2024
A practical fixed-parameter algorithm for constructing tree-child networks from multiple binary trees
L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
Algorithmica 84 (4), 917-960, 2022
222022
Polynomial-time algorithms for phylogenetic inference problems involving duplication and reticulation
L Van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
IEEE/ACM transactions on computational biology and bioinformatics 17 (1), 14-26, 2019
19*2019
Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
Y Murakami, L van Iersel, R Janssen, M Jones, V Moulton
arXiv preprint arXiv:1811.06777, 2018
192018
A unifying characterization of tree-based networks and orchard networks using cherry covers
L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
Advances in Applied Mathematics 129, 102222, 2021
172021
Orchard networks are trees with additional horizontal arcs
L van Iersel, R Janssen, M Jones, Y Murakami
Bulletin of Mathematical Biology 84 (8), 76, 2022
142022
Recognizing and realizing cactus metrics
M Hayamizu, KT Huber, V Moulton, Y Murakami
Information Processing Letters 157, 105916, 2020
112020
Linear time algorithm for tree-child network containment
R Janssen, Y Murakami
International Conference on Algorithms for Computational Biology, 93-107, 2020
112020
Reconstructibility of unrooted level-k phylogenetic networks from distances
L van Iersel, V Moulton, Y Murakami
Advances in Applied Mathematics 120, 102075, 2020
82020
Combining networks using cherry picking sequences
R Janssen, M Jones, Y Murakami
International Conference on Algorithms for Computational Biology, 77-92, 2020
82020
Polynomial invariants for cactuses
L van Iersel, V Moulton, Y Murakami
Information Processing Letters 182, 106394, 2023
32023
Level-2 networks from shortest and longest distances
KT Huber, L van Iersel, R Janssen, M Jones, V Moulton, Y Murakami
Discrete Applied Mathematics 306, 138-165, 2022
22022
On Phylogenetic Encodings and Orchard Networks
Y Murakami
Delft University of Technology, 2021
22021
The Burning Number Conjecture is True for Trees without Degree-2 Vertices
Y Murakami
Graphs and Combinatorics 40 (4), 82, 2024
1*2024
Orienting undirected phylogenetic networks to tree-child network
S Maeda, Y Kaneko, H Muramatsu, Y Murakami, M Hayamizu
arXiv preprint arXiv:2305.10162, 2023
12023
Resolving Unresolved Resolved and Unresolved Triplets Consistency Problems
DJ Harvey, J Jansson, M Marciniak, Y Murakami
International Workshop on Combinatorial Algorithms, 193-205, 2024
2024
A near-linear kernel for bounded-state parsimony distance
E Deen, L van Iersel, R Janssen, M Jones, Y Murakami, N Zeh
Journal of Computer and System Sciences 140, 103477, 2024
2024
Making a Network Orchard by Adding Leaves
L van Iersel, M Jones, E Julien, Y Murakami
arXiv preprint arXiv:2305.03106, 2023
2023
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Articles 1–20