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Filippo Utro
Filippo Utro
Computational Biology Center - IBM T.J. Watson Research
Verified email at us.ibm.com - Homepage
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Cited by
Cited by
Year
Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia
P Ntziachristos, A Tsirigos, PV Vlierberghe, J Nedjic, T Trimarchi, ...
Nature medicine 18 (2), 298-302, 2012
5322012
Liquid versus tissue biopsy for detecting acquired resistance and tumor heterogeneity in gastrointestinal cancers
AR Parikh, I Leshchiner, L Elagina, L Goyal, C Levovitz, G Siravegna, ...
Nature medicine 25 (9), 1415-1421, 2019
3222019
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
JC Motamayor, K Mockaitis, J Schmutz, N Haiminen, DL Iii, O Cornejo, ...
Genome biology 14, 1-25, 2013
2672013
Textual data compression in computational biology: a synopsis
R Giancarlo, D Scaturro, F Utro
Bioinformatics 25 (13), 1575-1586, 2009
1302009
Enhancing next‐generation sequencing‐guided cancer care through cognitive computing
NM Patel, VV Michelini, JM Snell, S Balu, AP Hoyle, JS Parker, ...
The oncologist 23 (2), 179-185, 2018
932018
Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer
R Giancarlo, D Scaturro, F Utro
BMC bioinformatics 9 (1), 1-19, 2008
752008
Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
R Giancarlo, SE Rombo, F Utro
Briefings in bioinformatics 15 (3), 390-406, 2014
612014
GenomicTools: a computational platform for developing high-throughput analytics in genomics
A Tsirigos, N Haiminen, E Bilal, F Utro
Bioinformatics 28 (2), 282-283, 2012
482012
Parallel genomic alterations of antigen and payload targets mediate polyclonal acquired clinical resistance to sacituzumab govitecan in triple-negative breast cancer.
JT Coates, S Sun, I Leshchiner, N Thimmiah, EE Martin, D McLoughlin, ...
Cancer discovery 11 (10), 2436, 2021
432021
Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma
KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ...
Neurology Genetics 3 (4), 2017
412017
Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning
R Giancarlo, SE Rombo, F Utro
Bioinformatics 31 (18), 2939-2946, 2015
302015
Distinct cellular dynamics associated with response to CAR-T therapy for refractory B cell lymphoma
NJ Haradhvala, MB Leick, K Maurer, SH Gohil, RC Larson, N Yao, ...
Nature Medicine 28 (9), 1848-1859, 2022
292022
Algorithmic paradigms for stability-based cluster validity and model selection statistical methods, with applications to microarray data analysis
R Giancarlo, F Utro
Theoretical Computer Science 428, 58-79, 2012
242012
Speeding up the Consensus Clustering methodology for microarray data analysis
R Giancarlo, F Utro
Algorithms for Molecular Biology 6 (1), 1-13, 2011
232011
Functional profiling of COVID-19 respiratory tract microbiomes
N Haiminen, F Utro, E Seabolt, L Parida
Scientific Reports 11 (1), 1-8, 2021
22*2021
Textual data compression in computational biology: Algorithmic techniques
R Giancarlo, D Scaturro, F Utro
Computer Science Review 6 (1), 1-25, 2012
222012
The three steps of clustering in the post-genomic era: a synopsis
R Giancarlo, GL Bosco, L Pinello, F Utro
Computational Intelligence Methods for Bioinformatics and Biostatistics: 7thá…, 2011
202011
Driver gene classification reveals a substantial overrepresentation of tumor suppressors among very large chromatin-regulating proteins
Z Waks, O Weissbrod, B Carmeli, R Norel, F Utro, Y Goldschmidt
Scientific reports 6 (1), 1-12, 2016
192016
A basic analysis toolkit for biological sequences
R Giancarlo, A Siragusa, E Siragusa, F Utro
Algorithms for Molecular Biology 2 (1), 1-16, 2007
162007
Comparative exomics of Phalariscultivars under salt stress
N Haiminen, M Klaas, Z Zhou, F Utro, P Cormican, T Didion, CS Jensen, ...
BMC genomics 15 (6), 1-12, 2014
152014
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