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Alexei A. Podtelezhnikov
Alexei A. Podtelezhnikov
Verified email at merck.com
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Cited by
Year
Integrated systems approach identifies genetic nodes and networks in late-onset Alzheimer’s disease
B Zhang, C Gaiteri, LG Bodea, Z Wang, J McElwee, AA Podtelezhnikov, ...
Cell 153 (3), 707-720, 2013
17172013
Phase I pharmacologic and pharmacodynamic study of the gamma secretase (Notch) inhibitor MK-0752 in adult patients with advanced solid tumors
I Krop, T Demuth, T Guthrie, PY Wen, WP Mason, P Chinnaiyan, ...
Journal of clinical oncology 30 (19), 2307-2313, 2012
3432012
Transcriptional architecture of the primate neocortex
A Bernard, LS Lubbers, KQ Tanis, R Luo, AA Podtelezhnikov, EM Finney, ...
Neuron 73 (6), 1083-1099, 2012
2462012
Mechanism of topology simplification by type II DNA topoisomerases
AV Vologodskii, W Zhang, VV Rybenkov, AA Podtelezhnikov, ...
Proceedings of the National Academy of Sciences 98 (6), 3045-3049, 2001
1872001
Large-scale effects of transcriptional DNA supercoiling in vivo
AS Krasilnikov, A Podtelezhnikov, A Vologodskii, SM Mirkin
Journal of molecular biology 292 (5), 1149-1160, 1999
1111999
Molecular insights into the pathogenesis of Alzheimer's disease and its relationship to normal aging
AA Podtelezhnikov, KQ Tanis, M Nebozhyn, WJ Ray, DJ Stone, ...
PloS one 6 (12), e29610, 2011
972011
Comparative transcriptomics of choroid plexus in Alzheimer’s disease, frontotemporal dementia and Huntington’s disease: implications for CSF homeostasis
EG Stopa, KQ Tanis, MC Miller, EV Nikonova, AA Podtelezhnikov, ...
Fluids and Barriers of the CNS 15, 1-10, 2018
942018
Blood-gene expression reveals reduced circadian rhythmicity in individuals resistant to sleep deprivation
ES Arnardottir, EV Nikonova, KR Shockley, AA Podtelezhnikov, RC Anafi, ...
Sleep 37 (10), 1589-1600, 2014
842014
Modeling HIV‐1 integrase complexes based on their hydrodynamic properties
AA Podtelezhnikov, K Gao, FD Bushman, JA McCammon
Biopolymers: Original Research on Biomolecules 68 (1), 110-120, 2003
812003
Equilibrium distributions of topological states in circular DNA: interplay of supercoiling and knotting
AA Podtelezhnikov, NR Cozzarelli, AV Vologodskii
Proceedings of the National Academy of Sciences 96 (23), 12974-12979, 1999
801999
Simulations of polymer cyclization by Brownian dynamics
A Podtelezhnikov, A Vologodskii
Macromolecules 30 (21), 6668-6673, 1997
771997
Multimerization-cyclization of DNA fragments as a method of conformational analysis
AA Podtelezhnikov, C Mao, NC Seeman, A Vologodskii
Biophysical Journal 79 (5), 2692-2704, 2000
692000
The transcriptomic signature of disease development and progression of nonalcoholic fatty liver disease
S Cazanave, A Podtelezhnikov, K Jensen, M Seneshaw, DP Kumar, ...
Scientific reports 7 (1), 17193, 2017
602017
Discovering biology in periodic data through phase set enrichment analysis (PSEA)
R Zhang, AA Podtelezhnikov, JB Hogenesch, RC Anafi
Journal of biological rhythms 31 (3), 244-257, 2016
592016
Dynamics of small loops in DNA molecules
AA Podtelezhnikov, AV Vologodskii
Macromolecules 33 (7), 2767-2771, 2000
532000
Bayesian segmental models with multiple sequence alignment profiles for protein secondary structure and contact map prediction
W Chu, Z Ghahramani, A Podtelezhnikov, DL Wild
IEEE/ACM transactions on computational biology and bioinformatics 3 (2), 98-113, 2006
432006
Network-driven plasma proteomics expose molecular changes in the Alzheimer’s brain
PA Jaeger, KM Lucin, M Britschgi, B Vardarajan, RP Huang, ED Kirby, ...
Molecular neurodegeneration 11, 1-18, 2016
382016
Application of a rat liver drug bioactivation transcriptional response assay early in drug development that informs chemically reactive metabolite formation and potential for …
JJ Monroe, KQ Tanis, AA Podtelezhnikov, T Nguyen, SV Machotka, ...
Toxicological Sciences 177 (1), 281-299, 2020
322020
Exhaustive Metropolis Monte Carlo sampling and analysis of polyalanine conformations adopted under the influence of hydrogen bonds
AA Podtelezhnikov, DL Wild
Proteins: Structure, Function, and Bioinformatics 61 (1), 94-104, 2005
282005
Development and Application of a Transcriptomic Signature of Bioactivation in an Advanced In Vitro Liver Model to Reduce Drug-induced Liver Injury Risk Early in …
W Kang, AA Podtelezhnikov, KQ Tanis, S Pacchione, M Su, KB Bleicher, ...
Toxicological Sciences 177 (1), 121-139, 2020
262020
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Articles 1–20