Sergey Knyazev
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QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data
P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ...
Bioinformatics 34 (1), 163-170, 2018
Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction
S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ...
Nucleic acids research 49 (17), e102-e102, 2021
Inference of genetic relatedness between viral quasispecies from sequencing data
O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ...
BMC genomics 18 (10), 81-88, 2017
Epidemiological data analysis of viral quasispecies in the next-generation sequencing era
S Knyazev, L Hughes, P Skums, A Zelikovsky
Briefings in bioinformatics 22 (1), 96-108, 2021
Benchmarking of computational error-correction methods for next-generation sequencing data
K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ...
Genome biology 21 (1), 1-13, 2020
Modeling conformational redox‐switch modulation of human succinic semialdehyde dehydrogenase
G Tamazian, J Ho Chang, S Knyazev, E Stepanov, KJ Kim, Y Porozov
Proteins: Structure, Function, and Bioinformatics 83 (12), 2217-2229, 2015
Dietary supplements and nutraceuticals under investigation for COVID-19 prevention and treatment
R Lordan, HM Rando, CS Greene
Msystems 6 (3), e00122-21, 2021
Repeat-aware evaluation of scaffolding tools
I Mandric, S Knyazev, A Zelikovsky
Bioinformatics 34 (15), 2530-2537, 2018
Technology dictates algorithms: recent developments in read alignment
M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ...
Genome biology 22 (1), 1-34, 2021
SARS-CoV-2 and COVID-19: An evolving review of diagnostics and therapeutics
HM Rando, CS Greene, MP Robson, SM Boca, N Wellhausen, R Lordan, ...
Manubot, 2021
MicrobeTrace: retooling molecular epidemiology for rapid public health response
EM Campbell, A Boyles, A Shankar, J Kim, S Knyazev, R Cintron, ...
PLoS computational biology 17 (9), e1009300, 2021
Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure
HM Rando, AL MacLean, AJ Lee, S Ray, V Bansal, AN Skelly, E Sell, ...
ArXiv, 2021
From Alpha to Zeta: Identifying variants and subtypes of SARS-CoV-2 via clustering
A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ...
bioRxiv, 2021
Using earth mover’s distance for viral outbreak investigations
A Melnyk, S Knyazev, F Vannberg, L Bunimovich, P Skums, A Zelikovsky
BMC genomics 21 (5), 1-9, 2020
Metabolic analysis of metatranscriptomic data from planktonic communities
I Mandric, S Knyazev, C Padilla, F Stewart, II Măndoiu, A Zelikovsky
International Symposium on Bioinformatics Research and Applications, 396-402, 2017
Available online: https://github. com
A Assortativity
Sergey-Knyazev/attribute_assortativity (accessed on 18 February 2020), 0
Clustering based identification of SARS-CoV-2 subtypes
A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ...
International Conference on Computational Advances in Bio and Medical …, 2020
Molecular Epidemiology of the HIV-1 Subtype B Sub-Epidemic in Bulgaria
I Alexiev, E M Campbell, S Knyazev, Y Pan, L Grigorova, R Dimitrova, ...
Viruses 12 (4), 441, 2020
Prediction of Protein Conformational Mobility with Validation Using Small-Angle X-ray Scattering
SN Knyazev, VY Kalyakin, IN Deryabin, BA Fedorov, AV Smirnov, ...
Biophysics 60 (6), 886–892, 2015
Coarse-grained model of protein interaction for bio-inspired nano-communication
S Knyazev, S Tarakanov, V Kuznetsov, Y Porozov, Y Koucheryavy, ...
2014 6th International Congress on Ultra Modern Telecommunications and …, 2014
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Articles 1–20