Haitham Ashoor
Haitham Ashoor
Principal Scientist at Takeda
Verified email at
Cited by
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An integrated expression atlas of miRNAs and their promoters in human and mouse
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ...
Nature biotechnology 35 (9), 872-878, 2017
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle
M Aranda, Y Li, YJ Liew, S Baumgarten, O Simakov, MC Wilson, J Piel, ...
Scientific reports 6 (1), 39734, 2016
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...
Nucleic acids research 44 (D1), D116-D125, 2016
DDR: efficient computational method to predict drug–target interactions using graph mining and machine learning approaches
RS Olayan, H Ashoor, VB Bajic
Bioinformatics 34 (7), 1164-1173, 2018
DTiGEMS+: drug–target interaction prediction using graph embedding, graph mining, and similarity-based techniques
MA Thafar, RS Olayan, H Ashoor, S Albaradei, VB Bajic, X Gao, ...
Journal of Cheminformatics 12 (1), 1-17, 2020
DENdb: database of integrated human enhancers
H Ashoor, D Kleftogiannis, A Radovanovic, VB Bajic
Database 2015, bav085, 2015
HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data
H Ashoor, A Herault, A Kamoun, F Radvanyi, VB Bajic, E Barillot, V Boeva
Bioinformatics 29 (23), 2979-2986, 2013
Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data
H Ashoor, X Chen, W Rosikiewicz, J Wang, A Cheng, P Wang, Y Ruan, ...
Nature communications 11 (1), 1173, 2020
A novel method for improved accuracy of transcription factor binding site prediction
AM Khamis, O Motwalli, R Oliva, BR Jankovic, YA Medvedeva, H Ashoor, ...
Nucleic acids research 46 (12), e72-e72, 2018
FARNA: knowledgebase of inferred functions of non-coding RNA transcripts
T Alam, M Uludag, M Essack, A Salhi, H Ashoor, JB Hanks, C Kapfer, ...
Nucleic acids research 45 (5), 2838-2848, 2017
Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants
A Magana-Mora, H Ashoor, BR Jankovic, A Kamau, K Awara, ...
Bioinformatics 29 (1), 117-118, 2013
HMCan-diff: a method to detect changes in histone modifications in cells with different genetic characteristics
H Ashoor, C Louis-Brennetot, I Janoueix-Lerosey, VB Bajic, V Boeva
Nucleic acids research 45 (8), e58-e58, 2017
Recognition of translation initiation sites in Arabidopsis thaliana
H Ashoor, AM Mora, K Awara, BR Jankovic, R Chowdhary, JAC Archer, ...
Systemic approaches in bioinformatics and computational systems biology …, 2012
Computational drug-target interaction prediction based on graph embedding and graph mining
MA Thafar, S Albaradie, RS Olayan, H Ashoor, M Essack, VB Bajic
Proceedings of the 2020 10th international conference on bioscience …, 2020
epihet for intra-tumoral epigenetic heterogeneity analysis and visualization
X Chen, H Ashoor, R Musich, J Wang, M Zhang, C Zhang, M Lu, S Li
Scientific Reports 11 (1), 376, 2021
Aströ m
D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor
G., Babina, M., Bertin, N., Burroughs, AM, et al, 872-878, 2017
TELS: a novel computational framework for identifying motif signatures of transcribed enhancers
D Kleftogiannis, H Ashoor, VB Bajic
Genomics, proteomics & bioinformatics 16 (5), 332-341, 2018
Genome informatics
AK Kesarwani, A Malhotra, A Srivastava, G Ananda, H Ashoor, P Kumar, ...
Academic Press, 2019
Plasma protein biomarkers for early prediction of lung cancer
MPA Davies, T Sato, H Ashoor, L Hou, T Liloglou, R Yang, JK Field
eBioMedicine 93, 104686, 2023
Discovery of prognostic and treatment predictive biomarkers in recently diagnosed type 1 diabetes patients treated with anti TNF-alpha
S Kostense, J Klap, H Ashoor, R Yang, GJ Weverling, K Sweet, MR Rigby, ...
medRxiv, 2023.05. 29.23290668, 2023
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