| Integrating machine learning and multiscale modeling—perspectives, challenges, and opportunities in the biological, biomedical, and behavioral sciences M Alber, A Buganza Tepole, WR Cannon, S De, S Dura-Bernal, ... NPJ digital medicine 2 (1), 115, 2019 | 499 | 2019 |
| Combining fully convolutional and recurrent neural networks for 3d biomedical image segmentation J Chen, L Yang, Y Zhang, M Alber, DZ Chen Advances in neural information processing systems 29, 2016 | 427 | 2016 |
| Multiscale modeling meets machine learning: What can we learn? GCY Peng, M Alber, A Buganza Tepole, WR Cannon, S De, ... Archives of Computational Methods in Engineering 28, 1017-1037, 2021 | 286 | 2021 |
| CompuCell, a multi-model framework for simulation of morphogenesis JA Izaguirre, R Chaturvedi, C Huang, T Cickovski, J Coffland, G Thomas, ... Bioinformatics 20 (7), 1129-1137, 2004 | 286 | 2004 |
| A multiscale model of thrombus development Z Xu, N Chen, MM Kamocka, ED Rosen, M Alber Journal of the Royal Society Interface 5 (24), 705-722, 2008 | 247 | 2008 |
| The geometry of peaked solitons and billiard solutions of a class of integrable PDE's MS Alber, R Camassa, DD Holm, JE Marsden Letters in Mathematical Physics 32, 137-151, 1994 | 224 | 1994 |
| On cellular automaton approaches to modeling biological cells MS Alber, MA Kiskowski, JA Glazier, Y Jiang Mathematical systems theory in biology, communications, computation, and …, 2003 | 214 | 2003 |
| Periodic reversal of direction allows Myxobacteria to swarm Y Wu, AD Kaiser, Y Jiang, MS Alber Proceedings of the National Academy of Sciences 106 (4), 1222-1227, 2009 | 192 | 2009 |
| A framework for three-dimensional simulation of morphogenesis TM Cickovski, C Huang, R Chaturvedi, T Glimm, HGE Hentschel, ... IEEE/ACM Transactions on Computational Biology and Bioinformatics 2 (4), 273-288, 2005 | 167 | 2005 |
| Study of blood flow impact on growth of thrombi using a multiscale model Z Xu, N Chen, SC Shadden, JE Marsden, MM Kamocka, ED Rosen, ... Soft Matter 5 (4), 769-779, 2009 | 161 | 2009 |
| On multiscale approaches to three-dimensional modelling of morphogenesis R Chaturvedi, C Huang, B Kazmierczak, T Schneider, JA Izaguirre, ... Journal of the Royal Society interface 2 (3), 237-253, 2005 | 158 | 2005 |
| Quantitative structural mechanobiology of platelet-driven blood clot contraction OV Kim, RI Litvinov, MS Alber, JW Weisel Nature communications 8 (1), 1274, 2017 | 152 | 2017 |
| A multiscale model of venous thrombus formation with surface-mediated control of blood coagulation cascade Z Xu, J Lioi, J Mu, MM Kamocka, X Liu, DZ Chen, ED Rosen, M Alber Biophysical journal 98 (9), 1723-1732, 2010 | 151 | 2010 |
| Structural basis for the nonlinear mechanics of fibrin networks under compression OV Kim, RI Litvinov, JW Weisel, MS Alber Biomaterials 35 (25), 6739-6749, 2014 | 150 | 2014 |
| A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis N Chen, JA Glazier, JA Izaguirre, MS Alber Computer physics communications 176 (11-12), 670-681, 2007 | 138 | 2007 |
| The mechanisms of microtubule catastrophe and rescue: implications from analysis of a dimer-scale computational model G Margolin, IV Gregoretti, TM Cickovski, C Li, W Shi, MS Alber, ... Molecular biology of the cell 23 (4), 642-656, 2012 | 121 | 2012 |
| Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution J Zhu, YT Zhang, MS Alber, SA Newman PLoS One 5 (5), e10892, 2010 | 113 | 2010 |
| Type IV pili interactions promote intercellular association and moderate swarming of Pseudomonas aeruginosa ME Anyan, A Amiri, CW Harvey, G Tierra, N Morales-Soto, CM Driscoll, ... Proceedings of the National Academy of Sciences 111 (50), 18013-18018, 2014 | 112 | 2014 |
| The Complex Geometry of Weak Piecewise Smooth Solutions of Integrable Nonlinear PDE's¶ of Shallow Water and Dym Type MS Alber, R Camassa, YN Fedorov, DD Holm, JE Marsden Communications in Mathematical Physics 221, 197-227, 2001 | 109 | 2001 |
| Mechanism for the catastrophe-promoting activity of the microtubule destabilizer Op18/stathmin KK Gupta, C Li, A Duan, EO Alberico, OV Kim, MS Alber, HV Goodson Proceedings of the National Academy of Sciences 110 (51), 20449-20454, 2013 | 101 | 2013 |
