Vanathi Gopalakrishnan
Vanathi Gopalakrishnan
Associate Professor of Biomedical Informatics, University of Pittsburgh
Verified email at
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Proteomic profiling of cerebrospinal fluid identifies biomarkers for amyotrophic lateral sclerosis
S Ranganathan, E Williams, P Ganchev, V Gopalakrishnan, D Lacomis, ...
Journal of neurochemistry 95 (5), 1461-1471, 2005
Discovery and verification of amyotrophic lateral sclerosis biomarkers by proteomics
H Ryberg, J An, S Darko, JL Lustgarten, M Jaffa, V Gopalakrishnan, ...
Muscle & nerve 42 (1), 104-111, 2010
Improving classification performance with discretization on biomedical datasets
JL Lustgarten, V Gopalakrishnan, H Grover, S Visweswaran
AMIA annual symposium proceedings 2008, 445, 2008
A multiplexed serum biomarker immunoassay panel discriminates clinical lung cancer patients from high-risk individuals found to be cancer-free by CT screening
WL Bigbee, V Gopalakrishnan, JL Weissfeld, DO Wilson, S Dacic, ...
Journal of thoracic oncology 7 (4), 698-708, 2012
Measuring stability of feature selection in biomedical datasets
JL Lustgarten, V Gopalakrishnan, S Visweswaran
AMIA annual symposium proceedings 2009, 406, 2009
A metaproteomic approach to study human-microbial ecosystems at the mucosal luminal interface
X Li, J LeBlanc, A Truong, R Vuthoori, SS Chen, JL Lustgarten, B Roth, ...
PloS one 6 (11), e26542, 2011
An overview and evaluation of recent machine learning imputation methods using cardiac imaging data
Y Liu, V Gopalakrishnan
Data 2 (1), 8, 2017
Application of an efficient Bayesian discretization method to biomedical data
JL Lustgarten, S Visweswaran, V Gopalakrishnan, GF Cooper
BMC bioinformatics 12, 1-15, 2011
Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs)
Y Liu, J Carbonell, P Weigele, V Gopalakrishnan
Journal of Computational Biology 13 (2), 394-406, 2006
Segmentation conditional random fields (SCRFs): A new approach for protein fold recognition
Y Liu, J Carbonell, P Weigele, V Gopalakrishnan
Research in Computational Molecular Biology: 9th Annual International …, 2005
Lung cancer serum biomarker discovery using label-free liquid chromatography-tandem mass spectrometry
X Zeng, BL Hood, T Zhao, TP Conrads, M Sun, V Gopalakrishnan, ...
Journal of Thoracic Oncology 6 (4), 725-734, 2011
Bayesian rule learning for biomedical data mining
V Gopalakrishnan, JL Lustgarten, S Visweswaran, GF Cooper
Bioinformatics 26 (5), 668-675, 2010
Comparison of probabilistic combination methods for protein secondary structure prediction
Y Liu, J Carbonell, J Klein-Seetharaman, V Gopalakrishnan
Bioinformatics 20 (17), 3099-3107, 2004
Evaluation of a 4‐protein serum biomarker panel—biglycan, annexin‐A 6, myeloperoxidase, and protein S 100‐A 9 (B‐AMP)—for the detection of esophageal adenocarcinoma
AH Zaidi, V Gopalakrishnan, PM Kasi, X Zeng, U Malhotra, ...
Cancer 120 (24), 3902-3913, 2014
Automatic annotation of protein motif function with Gene Ontology terms
X Lu, C Zhai, V Gopalakrishnan, BG Buchanan
BMC bioinformatics 5, 1-11, 2004
A computational framework for the detection of subcortical brain dysmaturation in neonatal MRI using 3D Convolutional Neural Networks
R Ceschin, A Zahner, W Reynolds, J Gaesser, G Zuccoli, CW Lo, ...
NeuroImage 178, 183-197, 2018
Induction of rules for biological macromolecule crystallization
D Hennessy, V Gopalakrishnan, BG Buchanan, JM Rosenberg, ...
Proceedings of the Second International Conference on Intelligent Systems …, 1994
Creating a pipeline of talent for informatics: STEM initiative for high school students in computer science, biology, and biomedical informatics
J Dutta-Moscato, V Gopalakrishnan, MT Lotze, MJ Becich
Journal of pathology informatics 5 (1), 12, 2014
Transfer learning of classification rules for biomarker discovery and verification from molecular profiling studies
P Ganchev, D Malehorn, WL Bigbee, V Gopalakrishnan
Journal of biomedical informatics 44, S17-S23, 2011
cMRI-BED: A novel informatics framework for cardiac MRI biomarker extraction and discovery applied to pediatric cardiomyopathy classification
V Gopalakrishnan, PG Menon, S Madan
Biomedical engineering online 14, 1-16, 2015
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