Arkarachai Fungtammasan
Cited by
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The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?
A Fungtammasan, E Walsh, F Chiaromonte, KA Eckert, KD Makova
Genome research 22 (6), 993-1005, 2012
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ...
Genome research 25 (5), 736-749, 2015
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ...
Genome biology 22 (1), 120, 2021
Reference genome and demographic history of the most endangered marine mammal, the vaquita
PA Morin, FI Archer, CD Avila, JR Balacco, YV Bukhman, W Chow, ...
Molecular Ecology Resources 21 (4), 1008-1020, 2021
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ...
Nature methods 19 (6), 687-695, 2022
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
S Ou, J Liu, KM Chougule, A Fungtammasan, AS Seetharam, JC Stein, ...
Nature communications 11 (1), 2288, 2020
Accurate chromosome-scale haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
bioRxiv, 810341, 2020
Reverse transcription errors and RNA–DNA differences at short tandem repeats
A Fungtammasan, M Tomaszkiewicz, R Campos-Sánchez, KA Eckert, ...
Molecular biology and evolution 33 (10), 2744-2758, 2016
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
A chromosome-level reference genome and pangenome for barn swallow population genomics
S Secomandi, GR Gallo, M Sozzoni, A Iannucci, E Galati, L Abueg, ...
Cell reports 42 (1), 2023
Hi‐C scaffolded short‐and long‐read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution
CR Peart, C Williams, SD Pophaly, BA Neely, FMD Gulland, DJ Adams, ...
Molecular ecology resources 21 (7), 2455-2470, 2021
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