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Arkarachai Fungtammasan
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Year
The complete sequence of a human genome
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...
Science 376 (6588), 44-53, 2022
18992022
Towards complete and error-free genome assemblies of all vertebrate species
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...
Nature 592 (7856), 737-746, 2021
14672021
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
13492019
A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome?
A Fungtammasan, E Walsh, F Chiaromonte, KA Eckert, KD Makova
Genome research 22 (6), 993-1005, 2012
1802012
Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions
D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ...
Nature communications 12 (1), 1660, 2021
1422021
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
1352021
The complete sequence of a human Y chromosome
A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ...
Nature 621 (7978), 344-354, 2023
1342023
Curated variation benchmarks for challenging medically relevant autosomal genes
J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ...
Nature biotechnology 40 (5), 672-680, 2022
1282022
Benchmarking challenging small variants with linked and long reads
J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ...
Cell Genomics 2 (5), 2022
1182022
Accurate typing of short tandem repeats from genome-wide sequencing data and its applications
A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ...
Genome research 25 (5), 736-749, 2015
1042015
Complete vertebrate mitogenomes reveal widespread repeats and gene duplications
G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ...
Genome biology 22 (1), 120, 2021
95*2021
Reference genome and demographic history of the most endangered marine mammal, the vaquita
PA Morin, FI Archer, CD Avila, JR Balacco, YV Bukhman, W Chow, ...
Molecular Ecology Resources 21 (4), 1008-1020, 2021
812021
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies
AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ...
Nature methods 19 (6), 687-695, 2022
672022
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 4794, 2020
602020
Effect of sequence depth and length in long-read assembly of the maize inbred NC358
S Ou, J Liu, KM Chougule, A Fungtammasan, AS Seetharam, JC Stein, ...
Nature communications 11 (1), 2288, 2020
562020
Accurate chromosome-scale haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
bioRxiv, 810341, 2020
28*2020
Reverse transcription errors and RNA–DNA differences at short tandem repeats
A Fungtammasan, M Tomaszkiewicz, R Campos-Sánchez, KA Eckert, ...
Molecular biology and evolution 33 (10), 2744-2758, 2016
162016
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
152019
A chromosome-level reference genome and pangenome for barn swallow population genomics
S Secomandi, GR Gallo, M Sozzoni, A Iannucci, E Galati, L Abueg, ...
Cell reports 42 (1), 2023
102023
Hi‐C scaffolded short‐and long‐read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution
CR Peart, C Williams, SD Pophaly, BA Neely, FMD Gulland, DJ Adams, ...
Molecular ecology resources 21 (7), 2455-2470, 2021
92021
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