| The complete sequence of a human genome S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ... Science 376 (6588), 44-53, 2022 | 2022 | 2022 |
| Towards complete and error-free genome assemblies of all vertebrate species A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ... Nature 592 (7856), 737-746, 2021 | 1616 | 2021 |
| Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ... Nature biotechnology 37 (10), 1155-1162, 2019 | 1370 | 2019 |
| A genome-wide analysis of common fragile sites: what features determine chromosomal instability in the human genome? A Fungtammasan, E Walsh, F Chiaromonte, KA Eckert, KD Makova Genome research 22 (6), 993-1005, 2012 | 181 | 2012 |
| Chromosome-scale, haplotype-resolved assembly of human genomes S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ... Nature biotechnology 39 (3), 309-312, 2021 | 162 | 2021 |
| The complete sequence of a human Y chromosome A Rhie, S Nurk, M Cechova, SJ Hoyt, DJ Taylor, N Altemose, PW Hook, ... Nature 621 (7978), 344-354, 2023 | 156 | 2023 |
| Shotgun transcriptome, spatial omics, and isothermal profiling of SARS-CoV-2 infection reveals unique host responses, viral diversification, and drug interactions D Butler, C Mozsary, C Meydan, J Foox, J Rosiene, A Shaiber, D Danko, ... Nature communications 12 (1), 1660, 2021 | 145 | 2021 |
| Curated variation benchmarks for challenging medically relevant autosomal genes J Wagner, ND Olson, L Harris, J McDaniel, H Cheng, A Fungtammasan, ... Nature biotechnology 40 (5), 672-680, 2022 | 136 | 2022 |
| Benchmarking challenging small variants with linked and long reads J Wagner, ND Olson, L Harris, Z Khan, J Farek, M Mahmoud, A Stankovic, ... Cell genomics 2 (5), 2022 | 123 | 2022 |
| Accurate typing of short tandem repeats from genome-wide sequencing data and its applications A Fungtammasan, G Ananda, SE Hile, MSW Su, C Sun, R Harris, ... Genome research 25 (5), 736-749, 2015 | 106 | 2015 |
| Complete vertebrate mitogenomes reveal widespread repeats and gene duplications G Formenti, A Rhie, J Balacco, B Haase, J Mountcastle, O Fedrigo, ... Genome biology 22 (1), 120, 2021 | 100* | 2021 |
| Reference genome and demographic history of the most endangered marine mammal, the vaquita PA Morin, FI Archer, CD Avila, JR Balacco, YV Bukhman, W Chow, ... Molecular Ecology Resources 21 (4), 1008-1020, 2021 | 82 | 2021 |
| Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies AM Mc Cartney, K Shafin, M Alonge, AV Bzikadze, G Formenti, ... Nature methods 19 (6), 687-695, 2022 | 72 | 2022 |
| A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 4794, 2020 | 61 | 2020 |
| Effect of sequence depth and length in long-read assembly of the maize inbred NC358 S Ou, J Liu, KM Chougule, A Fungtammasan, AS Seetharam, JC Stein, ... Nature communications 11 (1), 2288, 2020 | 56 | 2020 |
| Reverse transcription errors and RNA–DNA differences at short tandem repeats A Fungtammasan, M Tomaszkiewicz, R Campos-Sánchez, KA Eckert, ... Molecular biology and evolution 33 (10), 2744-2758, 2016 | 18 | 2016 |
| A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019 | 16 | 2019 |
| A chromosome-level reference genome and pangenome for barn swallow population genomics S Secomandi, GR Gallo, M Sozzoni, A Iannucci, E Galati, L Abueg, ... Cell reports 42 (1), 2023 | 10 | 2023 |
| Hi‐C scaffolded short‐and long‐read genome assemblies of the California sea lion are broadly consistent for syntenic inference across 45 million years of evolution CR Peart, C Williams, SD Pophaly, BA Neely, FMD Gulland, DJ Adams, ... Molecular ecology resources 21 (7), 2455-2470, 2021 | 9 | 2021 |
| How well can we create phased, diploid, human genomes?: An assessment of FALCON-Unzip phasing using a human trio A Fungtammasan, B Hannigan bioRxiv, 262196, 2018 | 4 | 2018 |
Kateryna MakovaProfessor of Biology, Penn State UniversityVerified email at psu.edu
