Hideya Kawaji

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Carninci PieroRIKEN IMS (Yokohama, JP) and Human Technopole (Milan, IT)Verified email at postman.riken.jp
Alistair ForrestSystems Biology and Genomics Lab, Harry Perkins Institute of Medical Research, UWAVerified email at perkins.uwa.edu.au
Timo LassmannTelethon Kids InstituteVerified email at telethonkids.org.au
Carsten O. DaubAssociate Professor, Karolinska InstitutetVerified email at ki.se
harukazu suzukiGroup Director, RIKEN CLSTVerified email at gsc.riken.jp
Erik ArnerGSKVerified email at gsk.com
Jessica SeverinRIKENVerified email at gsc.riken.jp
Michiel de HoonTeam Leader, RIKEN Center for Integrative Medical SciencesVerified email at riken.jp
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University, DenmarkVerified email at binf.ku.dk
Jayson HarshbargerTechnical Scientist at RIKEN Center for Life Science TechnologiesVerified email at gsc.riken.jp
David HumeMater Research Institute-University of QueenslandVerified email at uq.edu.au
Robin AnderssonUniversity of CopenhagenVerified email at bio.ku.dk
Mitsuoki KawanoNakamura Gakuen UniversityVerified email at nakamura-u.ac.jp
Colin SempleProfessor/Head of Bioinformatics, MRC Human Genetics Unit, University of EdinburghVerified email at ed.ac.uk
Geoffrey FaulknerQueensland Brain Institute @ Mater Research Institute - University of QueenslandVerified email at mater.uq.edu.au
Kenneth BaillieProfessor of Experimental Medicine, University of EdinburghVerified email at ed.ac.uk
Hideo MatsudaGraduate School of Information Science and Technology, Osaka UniversityVerified email at ist.osaka-u.ac.jp
Prof. Sean M. GrimmondThe University of Melbourne Centre for Cancer ResearchVerified email at unimelb.edu.au
Professor Kate SchroderClarivate Highly Cited Researcher; Lab Head, Institute for Molecular Bioscience, University of QLDVerified email at imb.uq.edu.au
Martin S. TaylorProfessor, MRC Human Genetics Unit, Institute of Genetics and Cancer, University of EdinburghVerified email at ed.ac.uk

Hideya Kawaji

Tokyo Metropolitan Institute of Medical Science

Verified email at igakuken.or.jp

transcriptome transcription starting site small RNA RNAome biomarker


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The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005	4108	2005
An atlas of active enhancers across human cell types and tissues R Andersson, C Gebhard, I Miguel-Escalada, I Hoof, J Bornholdt, M Boyd, ... Nature 507 (7493), 455-461, 2014	2707	2014
Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs RIKEN Genome Exploration Research Group Phase I Team: Carninci P. 2 Hayatsu ... Nature 420 (6915), 563-573, 2002	2148	2002
A promoter-level mammalian expression atlas Nature 507 (7493), 462-470, 2014	1757	2014
Genome-wide analysis of mammalian promoter architecture and evolution P Carninci, A Sandelin, B Lenhard, S Katayama, K Shimokawa, ... Nature genetics 38 (6), 626-635, 2006	1637	2006
The systems biology graphical notation NL Novère, M Hucka, H Mi, S Moodie, F Schreiber, A Sorokin, E Demir, ... Nature biotechnology 27 (8), 735-741, 2009	1060	2009
An atlas of human long non-coding RNAs with accurate 5′ ends CC Hon, JA Ramilowski, J Harshbarger, N Bertin, OJL Rackham, J Gough, ... Nature 543 (7644), 199-204, 2017	1036	2017
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, ... Proceedings of the National Academy of Sciences 100 (26), 15776-15781, 2003	984	2003
Functional annotation of a full-length mouse cDNA collection General organizer Hayashizaki Y. yosihide@ gsc. riken. go. uk 1 2 44 b Nature 409 (6821), 685-690, 2001	888	2001
Gateways to the FANTOM5 promoter level mammalian expression atlas M Lizio, J Harshbarger, H Shimoji, J Severin, T Kasukawa, S Sahin, ... Genome biology 16, 1-14, 2015	874	2015
An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010	848	2010
The BioMart community portal: an innovative alternative to large, centralized data repositories D Smedley, S Haider, S Durinck, L Pandini, P Provero, J Allen, O Arnaiz, ... Nucleic acids research 43 (W1), W589-W598, 2015	820	2015
A draft network of ligand–receptor-mediated multicellular signalling in human JA Ramilowski, T Goldberg, J Harshbarger, E Kloppmann, M Lizio, ... Nature communications 6 (1), 7866, 2015	783	2015
Ch IP‐Atlas: a data‐mining suite powered by full integration of public Ch IP‐seq data S Oki, T Ohta, G Shioi, H Hatanaka, O Ogasawara, Y Okuda, H Kawaji, ... EMBO reports 19 (12), e46255, 2018	656	2018
Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells E Arner, CO Daub, K Vitting-Seerup, R Andersson, B Lilje, F Drabløs, ... Science 347 (6225), 1010-1014, 2015	619	2015
An integrated expression atlas of miRNAs and their promoters in human and mouse D De Rie, I Abugessaisa, T Alam, E Arner, P Arner, H Ashoor, G Åström, ... Nature biotechnology 35 (9), 872-878, 2017	586	2017
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009	420	2009
Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation J Fraser, C Ferrai, AM Chiariello, M Schueler, T Rito, G Laudanno, ... Molecular systems biology 11 (12), 852, 2015	385	2015
Hidden layers of human small RNAs H Kawaji, M Nakamura, Y Takahashi, A Sandelin, S Katayama, S Fukuda, ... BMC genomics 9, 1-21, 2008	374	2008
Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages K Schroder, KM Irvine, MS Taylor, NJ Bokil, KA Le Cao, KA Masterman, ... Proceedings of the National Academy of Sciences 109 (16), E944-E953, 2012	346	2012

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