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Ali Punjani
Ali Punjani
PhD Candidate, University of Toronto, Vector Institute
Verified email at cs.toronto.edu - Homepage
Title
Cited by
Cited by
Year
cryoSPARC: algorithms for rapid unsupervised cryo-EM structure determination
A Punjani, JL Rubinstein, DJ Fleet, MA Brubaker
Nature methods 14 (3), 290-296, 2017
55832017
Non-uniform refinement: adaptive regularization improves single-particle cryo-EM reconstruction
A Punjani, H Zhang, DJ Fleet
Nature methods 17 (12), 1214-1221, 2020
8352020
3D variability analysis: Resolving continuous flexibility and discrete heterogeneity from single particle cryo-EM
A Punjani, DJ Fleet
Journal of structural biology 213 (2), 107702, 2021
6242021
Fast search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
2012 IEEE conference on computer vision and pattern recognition, 3108-3115, 2012
3092012
Deep learning helicopter dynamics models
A Punjani, P Abbeel
2015 IEEE International Conference on Robotics and Automation (ICRA), 3223-3230, 2015
2252015
Fast exact search in hamming space with multi-index hashing
M Norouzi, A Punjani, DJ Fleet
IEEE transactions on pattern analysis and machine intelligence 36 (6), 1107-1119, 2013
2022013
3DFlex: determining structure and motion of flexible proteins from cryo-EM
A Punjani, DJ Fleet
Nature Methods 20 (6), 860-870, 2023
802023
3D flexible refinement: Structure and motion of flexible proteins from cryo-EM
A Punjani, DJ Fleet
BioRxiv, 2021.04. 22.440893, 2021
602021
Building proteins in a day: efficient 3D molecular structure estimation with electron cryomicroscopy
A Punjani, MA Brubaker, DJ Fleet
IEEE Transactions on Pattern Analysis and Machine Intelligence 39 (4), 706-718, 2016
522016
Building proteins in a day: Efficient 3D molecular reconstruction
MA Brubaker, A Punjani, DJ Fleet
Proceedings of the IEEE Conference on Computer Vision and Pattern …, 2015
202015
Algorithmic advances in single particle cryo-EM data processing using CryoSPARC
A Punjani
Microscopy and Microanalysis 26 (S2), 2322-2323, 2020
172020
Fast search in hamming space with multi-index hashing
DJ Fleet, A Punjani, M Norouzi
2012 IEEE Conference on Computer Vision and Pattern Recognition, 3108-3115, 2012
172012
Alpha-Beta Divergences Discover Micro and Macro Structures in Data.
KS Narayan, A Punjani, P Abbeel
ICML, 796-804, 2015
122015
Real-time cryo-EM structure determination
A Punjani
Microscopy and Microanalysis 27 (S1), 1156-1157, 2021
72021
Smart data collection for CryoEM
T Bepler, AJ Borst, J Bouvette, G Cannone, S Chen, A Cheng, A Cheng, ...
Journal of Structural Biology 214 (4), 107913, 2022
52022
Protocol for rapid unsupervised cryo-EM structure determination using cryoSPARC software
A Punjani, M Brubaker, J Rubinstein, D Fleet
22017
Microscopic advances with large-scale learning: Stochastic optimization for cryo-EM
A Punjani, MA Brubaker
arXiv preprint arXiv:1501.04656, 2015
22015
Machine learning for helicopter dynamics models
A Punjani, P Abbeel
University of California, Berkeley, 2014
22014
3D flexible refinement: determining structure and motion of flexible proteins from cryo-EM
A Punjani, D Fleet
Microscopy and Microanalysis 29 (Supplement_1), 1024-1024, 2023
12023
Methods and systems for 3D structure estimation using non-uniform refinement
A Punjani, D Fleet, H Zhang
US Patent 11,680,914, 2023
12023
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