Javier Arsuaga
Javier Arsuaga
Professor of Mathematics and of Molecular and Cellular Biology, UC Davis
Verified email at - Homepage
Cited by
Cited by
Topological domain structure of the Escherichia coli chromosome
L Postow, CD Hardy, J Arsuaga, NR Cozzarelli
Genes & development 18 (14), 1766-1779, 2004
Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli
BJ Peter, J Arsuaga, AM Breier, AB Khodursky, PO Brown, NR Cozzarelli
Genome biology 5, 1-16, 2004
Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids
J Arsuaga, M Vázquez, S Trigueros, DW Sumners, J Roca
Proceedings of the National Academy of Sciences 99 (8), 5373-5377, 2002
DNA knots reveal a chiral organization of DNA in phage capsids
J Arsuaga, M Vazquez, P McGuirk, S Trigueros, DW Sumners, J Roca
Proceedings of the National Academy of Sciences 102 (26), 9165-9169, 2005
Investigation of viral DNA packaging using molecular mechanics models
J Arsuaga, RKZ Tan, M Vazquez, SC Harvey
Biophysical chemistry 101, 475-484, 2002
Chromosomes are predominantly located randomly with respect to each other in interphase human cells
MN Cornforth, KM Greulich-Bode, BD Loucas, J Arsuaga, M Vázquez, ...
The Journal of cell biology 159 (2), 237-244, 2002
Novel display of knotted DNA molecules by two-dimensional gel electrophoresis
S Trigueros, J Arsuaga, ME Vazquez, DW Sumners, J Roca
Nucleic acids research 29 (13), e67-e67, 2001
Bounds for the minimum step number of knots in the simple cubic lattice
R Scharein, K Ishihara, J Arsuaga, Y Diao, K Shimokawa, M Vazquez
Journal of Physics A: Mathematical and Theoretical 42 (47), 475006, 2009
Characterization of breast cancer by array comparative genomic hybridization
J Climent, JL Garcia, JH Mao, J Arsuaga, J Perez-Losada
Biochemistry and Cell Biology 85 (4), 497-508, 2007
Applications of computational homology to the analysis of treatment response in breast cancer patients
D DeWoskin, J Climent, I Cruz-White, M Vazquez, C Park, J Arsuaga
Topology and its Applications 157 (1), 157-164, 2010
Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases
X Hua, D Nguyen, B Raghavan, J Arsuaga, M Vazquez
Topology and its Applications 154 (7), 1381-1397, 2007
Linking of uniform random polygons in confined spaces
J Arsuaga, T Blackstone, Y Diao, E Karadayi, M Saito
Journal of Physics A: Mathematical and Theoretical 40 (9), 1925, 2007
Chromosome spatial clustering inferred from radiogenic aberrations
J Arsuaga, KM Greulich‐Bode, M Vazquez, M Bruckner, P Hahnfeldt, ...
International journal of radiation biology 80 (7), 507-515, 2004
The Rabl configuration limits topological entanglement of chromosomes in budding yeast
M Pouokam, B Cruz, S Burgess, MR Segal, M Vazquez, J Arsuaga
Scientific reports 9 (1), 6795, 2019
The effects of density on the topological structure of the mitochondrial DNA from trypanosomes
Y Diao, K Hinson, R Kaplan, M Vazquez, J Arsuaga
Journal of mathematical biology 64, 1087-1108, 2012
On the mean and variance of the writhe of random polygons
J Portillo, Y Diao, R Scharein, J Arsuaga, M Vazquez
Journal of Physics A: Mathematical and Theoretical 44 (27), 275004, 2011
A fast ergodic algorithm for generating ensembles of equilateral random polygons
R Varela, K Hinson, J Arsuaga, Y Diao
Journal of Physics A: Mathematical and Theoretical 42 (9), 095204, 2009
Reproducibility of 3D chromatin configuration reconstructions
MR Segal, H Xiong, D Capurso, M Vazquez, J Arsuaga
Biostatistics 15 (3), 442-456, 2014
DNA knotting in spooling like conformations in bacteriophages
J Arsuaga, Y Diao
Computational and Mathematical Methods in Medicine 9 (3-4), 303-316, 2008
Orientation of DNA minicircles balances density and topological complexity in kinetoplast DNA
Y Diao, V Rodriguez, M Klingbeil, J Arsuaga
Plos one 10 (6), e0130998, 2015
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